View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14997_low_1 (Length: 851)
Name: NF14997_low_1
Description: NF14997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14997_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 825; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 825; E-Value: 0
Query Start/End: Original strand, 8 - 836
Target Start/End: Complemental strand, 23853420 - 23852592
Alignment:
| Q |
8 |
ggacatcatcatagataccaattaactagagttcaattacatagagactcaattgtgtttgaatataaggtgtccccaaatataaataagtgctcaagat |
107 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853420 |
ggacatcaacatagataccaattaactagagttcaattacatagagactcaattgtgtttgaatataaggtgtccccaaatataaataagtgctcaagat |
23853321 |
T |
|
| Q |
108 |
atgcacggaaatagaacatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggtt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853320 |
atgcacggaaatagaacatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggtt |
23853221 |
T |
|
| Q |
208 |
gtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttca |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853220 |
gtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttca |
23853121 |
T |
|
| Q |
308 |
cttttgagtacatatttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853120 |
cttttgagtacatatttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagct |
23853021 |
T |
|
| Q |
408 |
ttaatgatccattatttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaat |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853020 |
ttaatgatccattatttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaat |
23852921 |
T |
|
| Q |
508 |
tgaccttaggaatccatgttacccacaaaaaggagaacaatttgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgct |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852920 |
tgaccttaggaatccatgttacccacaaaaaggagaacaatttgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgct |
23852821 |
T |
|
| Q |
608 |
cattcacagttcaagtatcttagttatttggaccttagtggaaacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaat |
707 |
Q |
| |
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| T |
23852820 |
cattcacagttcaagtatcttagttatttggaccttagtggaaacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaat |
23852721 |
T |
|
| Q |
708 |
ttctttctctctatgactcccatttgagtggtaagatcccaaataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttattt |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852720 |
ttctttctctctatgactcccatttgagtggtaagatcccaaataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttattt |
23852621 |
T |
|
| Q |
808 |
acactctgatgatgtcagttgggtttcaa |
836 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
23852620 |
acactctgatgatgtcagttgggtttcaa |
23852592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 187 - 836
Target Start/End: Complemental strand, 23752535 - 23751891
Alignment:
| Q |
187 |
cctatttaagttgtgttggttgtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagt |
286 |
Q |
| |
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|||||||||||||||||||||| ||| | ||||||||||||| |||| |||| ||||||| || ||||||| ||||||| |||||||||||||| |
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| T |
23752535 |
cctatttaagttgtgttggttgagtccc-----cgttgtgcccacccaacttacagcgttgcttcattcacttccctcaaatatgcatagaaaccaaagt |
23752441 |
T |
|
| Q |
287 |
tttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctc |
386 |
Q |
| |
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| ||||||| |||||||| |||||||| |||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||| | |
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| T |
23752440 |
tatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcatttggttgcatagaacaagagaggcaagcac |
23752341 |
T |
|
| Q |
387 |
ttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaacat |
486 |
Q |
| |
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|||||||| |||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23752340 |
ttcttgaactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatgaatgttgtaaatggaaaggtataagttgcagcaacat |
23752241 |
T |
|
| Q |
487 |
cacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaaaaggagaacaatttgattcaaactgtccctactcaaaatctaagcttgaa |
586 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |||||||||| | || || ||| | | ||||||||| | | ||||| ||||||| || |
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| T |
23752240 |
tacaggtcatgttgttaaaattgaccttaggaatccatgctacccacaaagaagaaaaaaatatcaatcaaactgttcattaacaaaaaataagcttaaa |
23752141 |
T |
|
| Q |
587 |
gctcagtatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtggaaacaatttcaattcaagtccaataccaaagtttatcc |
686 |
Q |
| |
|
|||| | |||||| | ||| |||| | || || |||||||| |||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
23752140 |
gctccagaaatccatacatctctttcaaattttaaaaatcttagtaatttagaccttagtggaaacaatttaaattcaagtccaataccaacatttatcc |
23752041 |
T |
|
| Q |
687 |
attctatgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaaataaccttggaaacctcacaaaattgtcctttcttga |
786 |
Q |
| |
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||| |||||||||||| |||| |||||| ||| ||| ||| |||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
23752040 |
atttaatgaatcagttaaaattcctttctatctctgattccaatttgagtggaataatcccaaataaccttagaaacctcacaaaattgaactttcttga |
23751941 |
T |
|
| Q |
787 |
tctcagtttcaatacttatttacactctgatgatgtcagttgggtttcaa |
836 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| | ||||||||||| |
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|
| T |
23751940 |
tctcagtttaaattcttatttacactctgatgatgtaaattgggtttcaa |
23751891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 257 - 836
Target Start/End: Complemental strand, 22619863 - 22619284
Alignment:
| Q |
257 |
cttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcat |
356 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||| |||||||| |||||||| |||| |||||||||||||||||| || |||||||||||| |
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|
| T |
22619863 |
cttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcat |
22619764 |
T |
|
| Q |
357 |
ttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatgactgttg |
456 |
Q |
| |
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|||||||| | |||||||||||| |||||||| | | | |||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||| ||||| |
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|
| T |
22619763 |
ttggttgcttagaacaagagaggcaagctcttttagcactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatgaatgttg |
22619664 |
T |
|
| Q |
457 |
taaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaaaaggagaacaatttgattca |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||| | || || ||| | | ||| |
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|
| T |
22619663 |
taaatggaaaggtataagttgcagcaacattacaggtcatgttataaaaattgaccttaggaatccatgctacccacaaagaagaaaaaaatatcaatca |
22619564 |
T |
|
| Q |
557 |
aactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtggaaacaatt |
656 |
Q |
| |
|
|||||| | | ||||| ||||||| |||||| | |||||| | ||| |||| | || || |||||||| |||| ||||||||||||||||||| |
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|
| T |
22619563 |
aactgttcattaacaaaaaataagcttaaagctccagaaatccatacatctctttcaaattttaaaaatcttagtaatttagaccttagtggaaacaatt |
22619464 |
T |
|
| Q |
657 |
tcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaaataacct |
756 |
Q |
| |
|
| ||||||||||||||||||| |||||||||| |||||||||||| |||| |||||| ||| ||| ||| |||||||||| | |||||||||||||| |
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|
| T |
22619463 |
taaattcaagtccaataccaacatttatccatttaatgaatcagttaaaattcctttctatctctgattccaatttgagtggaataatcccaaataacct |
22619364 |
T |
|
| Q |
757 |
tggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgtcagttgggtttcaa |
836 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| | ||||||||||| |
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|
| T |
22619363 |
tagaaacctcacaaaattgaactttcttgatctcagtttaaattcttatttacactctgatgatgtaaattgggtttcaa |
22619284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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