View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14997_low_4 (Length: 375)

Name: NF14997_low_4
Description: NF14997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14997_low_4
NF14997_low_4
[»] chr4 (3 HSPs)
chr4 (1-68)||(1868935-1869002)
chr4 (174-268)||(1858963-1859060)
chr4 (329-375)||(1869001-1869047)
[»] chr2 (1 HSPs)
chr2 (1-31)||(42251973-42252003)


Alignment Details
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 1868935 - 1869002
Alignment:
Q  1 tgtacaaatatcatttctcttattataaataggatttaattacatgcaaaccaaacaccccgttagtt 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1868935 tgtacaaatatcatttctcttattataaataggatttaattacatgcaaaccaaacaccccgttagtt 1869002  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 1858963 - 1859060
Alignment:
Q  174 ttcccatacataattgttcttttttaaaacttctcttgcatgttcctgatgtg---ttagctatttgaacttcgaatatttataaaccttcgaatact 268  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||| |||||   |||| |||||||||||  ||||||||||||||||||| ||||    
T  1858963 ttcccaaacataattgtccttttttaaaacttctcttgcatgttccttatgtgtaattagttatttgaactttaaatatttataaaccttcgattact 1859060  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 1869001 - 1869047
Alignment:
Q  329 tttgtgcttcatcttgtcacctaacttgaacccaatacttaaaattt 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1869001 tttgtgcttcatcttgtcacctaacttgaacccaatacttaaaattt 1869047  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 42251973 - 42252003
Alignment:
Q  1 tgtacaaatatcatttctcttattataaata 31  Q
    |||||||||||||||||||||||||||||||    
T  42251973 tgtacaaatatcatttctcttattataaata 42252003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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