View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14998_low_1 (Length: 372)
Name: NF14998_low_1
Description: NF14998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14998_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 45378773 - 45379104
Alignment:
| Q |
1 |
gcttcatcaatccctatctgatgagcatgaaagtacataggtacatgcatcagtttggaatttagcttgaaaaactcagtattagtttttaacaaattta |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45378773 |
gcttcatcaatccctatctgatgatcatgaaagtacataggtacatacatcagtttggaatttagcttgaaaaactcagtattagtttttaacaaattta |
45378872 |
T |
|
| Q |
101 |
tcgttttgtaaaatatatgcaccttgttatattattggttttgattctttattgcagctaataacattaatatcgactttgtgacattactctcggtcaa |
200 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45378873 |
tcattttgtaaaatatatgc---ttgttatattattggttttgattgtttattgcagctaataatattaatatcgactttgtgacattactctcggtcaa |
45378969 |
T |
|
| Q |
201 |
attttaaggtagtcttgtcttggagtggtttctggcaaaatgtaaccgtgtctgtcagtatgttttttgtctggttggccaagggggaatggaattttac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
45378970 |
attttaaggtagtcttgtcttggagtggtttctggcaaaatgtaaccgtgtc-----------------tctggttggccaaggg-----ggaattttac |
45379047 |
T |
|
| Q |
301 |
ttgcaaagtgttgatcaattttatatccccattggttacagttggcttgtacgtagt |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45379048 |
ttgcaaagtgttgatcaattttatatccccattggttacagttggcttgtacgtagt |
45379104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 33087573 - 33087634
Alignment:
| Q |
82 |
ttagtttttaacaaatttatcgttttgtaaaatatatgcaccttgttatattattggttttgatt |
146 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
33087573 |
ttagtttttaacaaatttattattttgtaaaacatatg---cttgttatattattcattttgatt |
33087634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University