View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14999_high_16 (Length: 290)

Name: NF14999_high_16
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14999_high_16
NF14999_high_16
[»] chr4 (5 HSPs)
chr4 (34-271)||(54247628-54247856)
chr4 (145-181)||(5609309-5609345)
chr4 (145-181)||(34844865-34844901)
chr4 (145-181)||(40058959-40058995)
chr4 (145-181)||(49287912-49287948)
[»] chr7 (5 HSPs)
chr7 (112-216)||(8435769-8435873)
chr7 (111-181)||(11910027-11910097)
chr7 (139-184)||(12211636-12211681)
chr7 (145-185)||(21835205-21835245)
chr7 (145-181)||(30579397-30579433)
[»] chr8 (1 HSPs)
chr8 (111-177)||(24339696-24339762)
[»] scaffold0199 (1 HSPs)
scaffold0199 (139-181)||(8508-8550)
[»] chr3 (3 HSPs)
chr3 (134-184)||(12279526-12279576)
chr3 (145-181)||(26174167-26174203)
chr3 (145-181)||(53234017-53234053)
[»] chr2 (2 HSPs)
chr2 (143-181)||(36390673-36390711)
chr2 (145-181)||(4567544-4567580)
[»] chr6 (1 HSPs)
chr6 (145-181)||(11448925-11448961)
[»] chr5 (1 HSPs)
chr5 (145-181)||(25586986-25587022)
[»] chr1 (6 HSPs)
chr1 (145-181)||(8077701-8077737)
chr1 (145-181)||(9500462-9500498)
chr1 (145-181)||(15059509-15059545)
chr1 (145-181)||(18646907-18646943)
chr1 (139-179)||(19034487-19034527)
chr1 (145-181)||(46113509-46113545)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 271
Target Start/End: Complemental strand, 54247856 - 54247628
Alignment:
Q  34 ctttcaaaactcagtatccagttcaacaaccgattaatatgaggggatcaattcatcgctcaataacggagacgacatttaaagccacaacaaagcttca 133  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  54247856 ctttcaaaactcagtatccagttcaataaccgattaatatgaggg-atcaattcatcgctcaataacggagatgacatttaaagtcacaacaaagcttca 54247758  T
Q  134 tataaacttgtccaccgaaattggtaccagagaaaatcgaacctgagatctccaaaaaagtaaacttgaagatctcaagtcaataactaggtctttgtat 233  Q
    |||| |||||||||||||||||| ||| ||||||||||||| |        | ||| |||||||||| |||||||||| ||||| ||||  |||||||||    
T  54247757 tatagacttgtccaccgaaattgatacaagagaaaatcgaatc--------ctaaagaagtaaacttcaagatctcaaatcaatcactaaatctttgtat 54247666  T
Q  234 attgtatattatggtttacgaacacaaatagagcataa 271  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  54247665 attgtatattacggtttacgaacataaatagagcataa 54247628  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 5609309 - 5609345
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  5609309 ccaccgaaattggcaccagagagaatcgaacctgaga 5609345  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 34844865 - 34844901
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  34844865 ccaccgaaattggcaccagagagaatcgaacctgaga 34844901  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 40058959 - 40058995
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  40058959 ccaccgaaattggcaccagagagaatcgaacctgaga 40058995  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 49287948 - 49287912
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  49287948 ccaccgaaattggcaccagagagaatcgaacctgaga 49287912  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 8435769 - 8435873
Alignment:
Q  112 ttaaagccacaacaaagcttcatataaacttgtccaccgaaattggtaccagagaaaatcgaacctgagatctccaaaaaagtaaacttgaagatctcaa 211  Q
    ||||||||| ||||||||||  |||  ||||| ||||||||||||| ||||||| ||||||||||| |||||| ||||  || |||||  |||||| |||    
T  8435769 ttaaagccaaaacaaagctttgtatggacttgcccaccgaaattggcaccagaggaaatcgaacctaagatcttcaaaggagcaaactccaagatcccaa 8435868  T
Q  212 gtcaa 216  Q
    |||||    
T  8435869 gtcaa 8435873  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 11910027 - 11910097
Alignment:
Q  111 tttaaagccacaacaaagcttcatataaacttgtccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    |||||||| | ||||||||||| |||  ||||| ||||| ||||||  |||||||||||| ||||||||||    
T  11910027 tttaaagctagaacaaagcttcgtatggacttgaccaccaaaattgacaccagagaaaattgaacctgaga 11910097  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 12211636 - 12211681
Alignment:
Q  139 acttgtccaccgaaattggtaccagagaaaatcgaacctgagatct 184  Q
    ||||||||| ||||||||| ||||||| ||||| ||||||||||||    
T  12211636 acttgtccatcgaaattggcaccagaggaaatcaaacctgagatct 12211681  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 21835245 - 21835205
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgagatctc 185  Q
    ||||||||||||| |||||||  ||||||||||||||||||    
T  21835245 ccaccgaaattggcaccagagggaatcgaacctgagatctc 21835205  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 30579433 - 30579397
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  30579433 ccacctaaattggcaccagagaaaatcgaacctgaga 30579397  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 24339696 - 24339762
Alignment:
Q  111 tttaaagccacaacaaagcttcatataaacttgtccaccgaaattggtaccagagaaaatcgaacct 177  Q
    |||||||||| | ||||||||  ||| ||||| ||||||||||||||||| ||||||||||||||||    
T  24339696 tttaaagccaaagcaaagctttgtatgaacttatccaccgaaattggtacaagagaaaatcgaacct 24339762  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 8508 - 8550
Alignment:
Q  139 acttgtccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||    
T  8508 acttgcccaccgaaattggcaccagagataatcgaacctgaga 8550  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 12279526 - 12279576
Alignment:
Q  134 tataaacttgtccaccgaaattggtaccagagaaaatcgaacctgagatct 184  Q
    |||| ||||||||||||||||||| || |||||||||| || |||||||||    
T  12279526 tatagacttgtccaccgaaattggcacgagagaaaatcaaatctgagatct 12279576  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 26174203 - 26174167
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  26174203 ccaccgaaattggcaccagaggaaatcgaacctgaga 26174167  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 53234017 - 53234053
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  53234017 ccaccgaaattggcaccagagagaatcgaacctgaga 53234053  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 36390673 - 36390711
Alignment:
Q  143 gtccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  36390673 gtccaccgaaattggcaccagaggaaatcgaacctgaga 36390711  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 4567544 - 4567580
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  4567544 ccaccgaaattggcaccagaggaaatcgaacctgaga 4567580  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 11448961 - 11448925
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  11448961 ccaccgaaattggcaccagagagaatcgaacctgaga 11448925  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 25587022 - 25586986
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  25587022 ccaccgaaattggcaccagaggaaatcgaacctgaga 25586986  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 8077737 - 8077701
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  8077737 ccaccgaaattggcaccagagagaatcgaacctgaga 8077701  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 9500462 - 9500498
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  9500462 ccaccgaaattggcaccagagagaatcgaacctgaga 9500498  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 15059509 - 15059545
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  15059509 ccaccgaaattggcaccagagagaatcgaacctgaga 15059545  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 18646943 - 18646907
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  18646943 ccaccgaaattggcaccagagagaatcgaacctgaga 18646907  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 19034487 - 19034527
Alignment:
Q  139 acttgtccaccgaaattggtaccagagaaaatcgaacctga 179  Q
    ||||| ||||||||||||| |||||||| ||||||||||||    
T  19034487 acttgcccaccgaaattggcaccagagataatcgaacctga 19034527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 46113509 - 46113545
Alignment:
Q  145 ccaccgaaattggtaccagagaaaatcgaacctgaga 181  Q
    |||||||||||||||||||||  ||||||||||||||    
T  46113509 ccaccgaaattggtaccagagggaatcgaacctgaga 46113545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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