View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14999_high_18 (Length: 274)
Name: NF14999_high_18
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14999_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 34548330 - 34548090
Alignment:
| Q |
15 |
aatatccaagtttggtgaatctaaacttttactaatgccaagagtttcatatttaatgagataaagcatatagataactttataaatgggaccgtgcaag |
114 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34548330 |
aatatccaagtttggtgaatctgaacttttactgatgctaagagtttcacatttaatgagataaagcatatagataactttataaatgggaccgtgcaag |
34548231 |
T |
|
| Q |
115 |
tcatcgccatattaatcagatttataaggatgtgctaaactaaatataaaaagtctaatatggtattagaactatctcttaagggtcgtccacaatttat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34548230 |
tcatcgccatattaatcagatttataaggatgtgctaaactaaatataaaaagtctaatatggtattagaactatctcttaagggtcgtccacaatttat |
34548131 |
T |
|
| Q |
215 |
attcacgcaccaaatctaaaagtcatgagcacaacaagagatt |
257 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
34548130 |
attcacgtaccaaatct--aagtcatgagcacaacaagagatt |
34548090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University