View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14999_high_7 (Length: 393)

Name: NF14999_high_7
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14999_high_7
NF14999_high_7
[»] chr1 (3 HSPs)
chr1 (13-376)||(34026159-34026539)
chr1 (67-273)||(35015172-35015372)
chr1 (298-343)||(35015385-35015430)
[»] scaffold0340 (1 HSPs)
scaffold0340 (67-273)||(9591-9791)
[»] chr8 (1 HSPs)
chr8 (67-273)||(26811780-26811980)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 34026539 - 34026159
Alignment:
Q  13 aatatcatctacggtttctctatgcgtctcactaccaccatgccacatttcaaatgcagcatccatgttttgagaatagcacttgtacccacgttaaaaa 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34026539 aatatcatctacggtttctctgtgcgtctcactaccaccatgccacatttcaaatgcagcatccatgttttgagaatagcacttgtacccacgttaaaaa 34026440  T
Q  113 cttgagaactttgagaaaa-gaacatcccttacaaaaatgggcaatgatagaagagaagattgatacatttgtgcacaaactcacaaaacaccatcaaaa 211  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34026439 cttgagaactttgagaaaaagaacatcccttacaaaaatgggcaatgatagaagagaagattgatacatttgtgcacagactcacaaaacaccatcaaaa 34026340  T
Q  212 aattttaatccaaatcatcaataattatttttgaagatttataaaacttgatcccaaaa----------------tcaagagatatagagagaaacagaa 295  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||    
T  34026339 ttttttaatccaaatcatcaataattatttttgaagatttataaaacttgatcccaaaatcatcagccaataatttcaagagatatagagagaaacagaa 34026240  T
Q  296 aaaagagtaaatttttgtgattacttgattagaattaaaaatttatttggaagttgacatggttgggtggttgatagttgt 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34026239 aaaagagtaaatttttgtgattacttgattagaattaaaaatttatttggaagttgacatggttgggtggttgatagttgt 34026159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 273
Target Start/End: Original strand, 35015172 - 35015372
Alignment:
Q  67 tgcagcatccatgttttgagaatagcacttgtacccacgttaaaaacttgagaactttga--gaaaagaacatcccttacaaaaatgggcaatgatagaa 164  Q
    |||||||||||||||||||||||| |||||||| | |||||| ||| ||||||||||| |  |||||||||| ||||||||||  |  | |||| ||| |    
T  35015172 tgcagcatccatgttttgagaatatcacttgtaacaacgttataaatttgagaacttttaaagaaaagaacaacccttacaaat-taagaaatgctagga 35015270  T
Q  165 gagaagattgatacatttgtgcacaa--actcacaaaacaccatcaaaaaattttaatccaaatcatcaataattatttttgaagatttataaaacttga 262  Q
    |||||||||||||||| |||||||||  ||||||   | ||         |||| || ||||||| ||||||||||||||||||||||||||||| |||     
T  35015271 gagaagattgatacatatgtgcacaatgactcacgttatac---------atttgaaaccaaatcttcaataattatttttgaagatttataaaagttgg 35015361  T
Q  263 tcccaaaatca 273  Q
    |||||||||||    
T  35015362 tcccaaaatca 35015372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 35015385 - 35015430
Alignment:
Q  298 aagagtaaatttttgtgattacttgattagaattaaaaatttattt 343  Q
    |||| |||||||||||||||||||||| ||||||| ||||| ||||    
T  35015385 aagaataaatttttgtgattacttgataagaattagaaattgattt 35015430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 67 - 273
Target Start/End: Original strand, 9591 - 9791
Alignment:
Q  67 tgcagcatccatgttttgagaatagcacttgtacccacgttaaaaacttgagaacttt--gagaaaagaacatcccttacaaaaatgggcaatgatagaa 164  Q
    |||||||||||| |||||||||||||||||||| | |||||| ||| |||||||||||  |||||||||||| ||||||||||  |  | |||| ||| |    
T  9591 tgcagcatccatattttgagaatagcacttgtaacaacgttataaatttgagaacttttagagaaaagaacaacccttacaaat-taagaaatgctagga 9689  T
Q  165 gagaagattgatacatttgtgcacaa--actcacaaaacaccatcaaaaaattttaatccaaatcatcaataattatttttgaagatttataaaacttga 262  Q
    |||||||||||||||| |||||||||  ||||||   | ||         |||| || ||||||| ||||||||||||||||||||||||||||| |||     
T  9690 gagaagattgatacatatgtgcacaatgactcacgttatac---------atttgaaaccaaatcttcaataattatttttgaagatttataaaagttgg 9780  T
Q  263 tcccaaaatca 273  Q
    |||||||||||    
T  9781 tcccaaaatca 9791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 273
Target Start/End: Complemental strand, 26811980 - 26811780
Alignment:
Q  67 tgcagcatccatgttttgagaatagcacttgtacccacgttaaaaacttgagaactttga--gaaaagaacatcccttacaaaaatgggcaatgatagaa 164  Q
    |||||||||||| ||||||||||| |||||||| | |||||| ||| ||||||||||| |  |||||||||| ||||||||||  |  | |||| ||| |    
T  26811980 tgcagcatccattttttgagaatatcacttgtaacaacgttataaatttgagaacttttatagaaaagaacaacccttacaaat-taagaaatgctagga 26811882  T
Q  165 gagaagattgatacatttgtgcacaa--actcacaaaacaccatcaaaaaattttaatccaaatcatcaataattatttttgaagatttataaaacttga 262  Q
    |||||||||||||||| |||||||||  ||||||   | ||         |||| || ||||||| ||||||||||||||||||||||||||||| |||     
T  26811881 gagaagattgatacatatgtgcacaatgactcacgttatac---------atttgaaaccaaatcttcaataattatttttgaagatttataaaagttgg 26811791  T
Q  263 tcccaaaatca 273  Q
    |||||||||||    
T  26811790 tcccaaaatca 26811780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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