View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14999_high_8 (Length: 389)
Name: NF14999_high_8
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14999_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 44910728 - 44910367
Alignment:
| Q |
18 |
ctatatacatacggaacattggtcatcaaaagttattggcaagcattaaaatgcattatcttagacattctcattcagggggaattgtttagattctgcc |
117 |
Q |
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| T |
44910728 |
ctatatacatacagaacattggtcatcaaaagttattggcaagcattaaaatgcattatcttagacattctcattcagagggaattgtttagattctgcc |
44910629 |
T |
|
| Q |
118 |
ataataacgnnnnnnnnnnnnnnnnnnnnttaggaagagaaaaattgtcaataaataaagtggcgccaatgaccattttacaaaagtcctcgtggtgttt |
217 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44910628 |
ataataacgttttttttttaaaaaaaaaattaggaagagaaaaattgtcaataaataaagtggcgccaatgaccattttacaaaagtcctcgtggtgttt |
44910529 |
T |
|
| Q |
218 |
tgaactctcaaagttgcacagtcaaagtcttaccaccgagctcacacctcgtggataatattcttagttggtgaaagaagtttattgacaagaatttcag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44910528 |
tgaactctcaaagttgcacagtcaaagtcttaccaccgagctcacacctcgtggataatattcttagttggtgaaagaagtttaatgacaagaatttcag |
44910429 |
T |
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| Q |
318 |
tttagttgcataattcatgcaaatacttttcgtatactagttcacattccctgtcccctatg |
379 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44910428 |
tttagttgcatcattcatgcaaatacttttcgtatactagttcacattccctgtcccctatg |
44910367 |
T |
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