View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14999_low_10 (Length: 387)
Name: NF14999_low_10
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14999_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 143 - 375
Target Start/End: Complemental strand, 33403491 - 33403259
Alignment:
| Q |
143 |
taataatcaaagattgaatacacttagaaatatcctaaaaaatttgataactagcgtctaagttatatatatgatcgaccatctttgcgaaacataattt |
242 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33403491 |
taataatcaaagattgaatacacatagaaatatcctaaaaaatttgataactagcgtctaagttatatatatgatcgaccatctttgcgaaacataattt |
33403392 |
T |
|
| Q |
243 |
aacgacaaaaatacttttgattgaaaaaacatgttttagtggggcaattgcccttgaatcctatagagtagataggtcctacaagtacatggtgttccct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33403391 |
aacgacaaaaatacttttgattgaaaaaacatgttttagtggggcaattgcccttgaatcctatagagtagataggtcctacaagtacatggtgttccct |
33403292 |
T |
|
| Q |
343 |
tcacttttaggacgaggtagttaagatgatatt |
375 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
33403291 |
tcacttttaggacgagatagttaagatgatatt |
33403259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 33403575 - 33403479
Alignment:
| Q |
32 |
tccaacctcaaaatttgacatatttgcgtaaattattttttcaaaagtacaatgcannnnnnnnggtacaaccaatgcatgtattaataatcaaaga |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
33403575 |
tccaacctcaaaatttgacatatttgcgtaaattattttttcaaaagtacaatgcatttttttttatacaatcaatgcatgtattaataatcaaaga |
33403479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University