View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14999_low_12 (Length: 348)

Name: NF14999_low_12
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14999_low_12
NF14999_low_12
[»] chr8 (7 HSPs)
chr8 (10-215)||(29960910-29961112)
chr8 (221-330)||(4834970-4835079)
chr8 (253-315)||(41474293-41474355)
chr8 (272-330)||(20896187-20896245)
chr8 (223-303)||(16467583-16467663)
chr8 (276-330)||(44077744-44077798)
chr8 (272-329)||(44132874-44132931)
[»] chr4 (16 HSPs)
chr4 (223-330)||(52673198-52673305)
chr4 (227-330)||(29693184-29693285)
chr4 (221-330)||(53406489-53406597)
chr4 (223-330)||(29544162-29544269)
chr4 (214-330)||(46079340-46079456)
chr4 (268-328)||(29724351-29724411)
chr4 (278-318)||(40202260-40202300)
chr4 (272-329)||(53176872-53176929)
chr4 (272-320)||(30643602-30643650)
chr4 (269-329)||(44015413-44015473)
chr4 (279-318)||(1208706-1208745)
chr4 (278-329)||(19473052-19473103)
chr4 (272-327)||(31455897-31455952)
chr4 (268-329)||(52198377-52198438)
chr4 (272-328)||(50041816-50041872)
chr4 (272-328)||(50049038-50049094)
[»] chr2 (13 HSPs)
chr2 (223-330)||(39728970-39729077)
chr2 (225-330)||(6752074-6752179)
chr2 (221-330)||(23395915-23396024)
chr2 (231-330)||(41069673-41069772)
chr2 (225-330)||(11226132-11226237)
chr2 (223-330)||(31750448-31750553)
chr2 (272-330)||(32832593-32832651)
chr2 (240-303)||(3496805-3496868)
chr2 (240-303)||(15141881-15141944)
chr2 (272-318)||(36562752-36562798)
chr2 (272-329)||(13477690-13477747)
chr2 (246-303)||(19037073-19037130)
chr2 (280-329)||(40204728-40204777)
[»] chr1 (16 HSPs)
chr1 (230-330)||(48914985-48915085)
chr1 (221-330)||(48915177-48915284)
chr1 (239-330)||(48915376-48915467)
chr1 (223-330)||(19456310-19456417)
chr1 (223-330)||(24671140-24671247)
chr1 (223-330)||(50539728-50539835)
chr1 (223-329)||(26478546-26478652)
chr1 (272-317)||(20717120-20717165)
chr1 (214-303)||(27032326-27032415)
chr1 (268-328)||(49177424-49177483)
chr1 (272-318)||(5398034-5398080)
chr1 (221-303)||(27907685-27907767)
chr1 (272-329)||(19431391-19431448)
chr1 (272-330)||(49177278-49177334)
chr1 (270-319)||(25586867-25586916)
chr1 (282-330)||(3950295-3950343)
[»] chr3 (11 HSPs)
chr3 (223-330)||(10688592-10688699)
chr3 (214-303)||(49279464-49279553)
chr3 (271-330)||(47548868-47548927)
chr3 (272-330)||(46348392-46348450)
chr3 (272-316)||(39488495-39488539)
chr3 (240-303)||(4037142-4037205)
chr3 (240-303)||(11233507-11233570)
chr3 (223-330)||(50700003-50700103)
chr3 (272-330)||(39485470-39485528)
chr3 (279-313)||(42466974-42467008)
chr3 (280-329)||(16278813-16278862)
[»] chr5 (12 HSPs)
chr5 (235-309)||(2651618-2651692)
chr5 (258-329)||(27554924-27554995)
chr5 (229-330)||(22658818-22658918)
chr5 (253-330)||(34928806-34928885)
chr5 (279-330)||(14151942-14151993)
chr5 (272-329)||(33953161-33953218)
chr5 (268-328)||(18267856-18267916)
chr5 (272-319)||(18623597-18623644)
chr5 (240-303)||(37515589-37515652)
chr5 (272-330)||(22653513-22653571)
chr5 (272-329)||(19824617-19824674)
chr5 (278-329)||(14281810-14281862)
[»] chr7 (13 HSPs)
chr7 (230-330)||(2628436-2628536)
chr7 (223-330)||(9488769-9488877)
chr7 (272-330)||(32279294-32279352)
chr7 (272-313)||(33747989-33748030)
chr7 (240-303)||(16876743-16876806)
chr7 (240-303)||(18867954-18868017)
chr7 (240-303)||(23185929-23185992)
chr7 (240-303)||(46425344-46425407)
chr7 (272-330)||(37685190-37685248)
chr7 (268-309)||(15667897-15667938)
chr7 (268-329)||(32204771-32204832)
chr7 (223-303)||(34328091-34328169)
chr7 (278-319)||(43368497-43368538)
[»] chr6 (8 HSPs)
chr6 (267-329)||(26847168-26847230)
chr6 (273-329)||(457683-457739)
chr6 (222-303)||(31743843-31743922)
chr6 (240-303)||(9928262-9928325)
chr6 (282-329)||(24226101-24226148)
chr6 (240-309)||(9549369-9549436)
chr6 (246-303)||(7506639-7506696)
chr6 (214-303)||(22469674-22469763)
[»] scaffold0289 (1 HSPs)
scaffold0289 (268-309)||(20314-20355)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 29960910 - 29961112
Alignment:
Q  10 ataatacttcaaatgaatttattgattaaatttgtatagannnnnnnnatgatataatgcatgcaagaatgactgagcccaatcgatgtcccactttatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||        ||||||||||| |    |||||||||||||||| ||||||||||||||||||    
T  29960910 ataatacttcaaatgaatttattgattaaatttgtatagattttttttatgatataatgta----agaatgactgagcccagtcgatgtcccactttatt 29961005  T
Q  110 gtgccgattttgaaactttgttgcatgttttgagggattgcaagattaggtggcaaaagcagtttctaacaactagtctt-ggggaattaagtgtctcat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  29961006 gtgccgattttgaaactttgttgcatgttttgagggattgcaagattaggtggcaaaagcagtttctaacaactagtcttgggggaagtaagtgtctcat 29961105  T
Q  209 tagagtt 215  Q
    | |||||    
T  29961106 tggagtt 29961112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 4835079 - 4834970
Alignment:
Q  221 cattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctcta 320  Q
    |||||||| ||||||||||||||||| ||||  ||||||| ||||  ||| ||| | | ||||||||||||||||||| |||||||||||||| |||||     
T  4835079 cattggtgccattgatacttttgtgtctatctttctcttaacaactcattctctttcacctaaataatttattttaatcattcattcatcattctctctc 4834980  T
Q  321 atctaaaatg 330  Q
    ||||||||||    
T  4834979 atctaaaatg 4834970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 41474355 - 41474293
Alignment:
Q  253 ctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcatttt 315  Q
    |||||||| |||| ||||||||||||| |||||||||||||||||| |||||||||| |||||    
T  41474355 ctctcttaacaacttattatctcttatttaaataatttattttaatcattcattcattatttt 41474293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 20896245 - 20896187
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    ||||| ||||||||||||||||||||| ||||||  |||||| ||||| ||||||||||    
T  20896245 tctctcatctaaataatttattttaatcattcatatatcattatctctcatctaaaatg 20896187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 16467583 - 16467663
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    |||||||||| ||||  |||||||||||| ||||||||  ||  |||| ||||| |||||||||||||| |||||| ||||    
T  16467583 ttggtgtcatagataactttgtgtttatctctctcttaataatttattctctctcatctaaataatttagtttaatcattc 16467663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 44077798 - 44077744
Alignment:
Q  276 ttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    ||||||||||||||||||||||| ||| |||||||| | ||| | ||||||||||    
T  44077798 ttatctaaataatttattttaattatttattcatcactctctttcatctaaaatg 44077744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 44132931 - 44132874
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||| ||| ||||||||||||||||| ||||||  |||||| ||||| |||||||||    
T  44132931 tctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaat 44132874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 223 - 330
Target Start/End: Complemental strand, 52673305 - 52673198
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 322  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||| ||||| ||    
T  52673305 ttggtgtcattgatatttttgtgtctatctctctcttaccaacatattctctctcatcaaaataatttattttaattattcattcatcattctctctcat 52673206  T
Q  323 ctaaaatg 330  Q
    ||||||||    
T  52673205 ctaaaatg 52673198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 29693184 - 29693285
Alignment:
Q  227 tgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaa 326  Q
    |||||||| ||||||||||| ||||  ||||||| |||||||||||||||||| |||||||||||||||||| ||| ||| |||||| ||||| ||||||    
T  29693184 tgtcattggtacttttgtgtctatc--tctcttaacaacatattatctcttatttaaataatttattttaattatttatttatcattctctctcatctaa 29693281  T
Q  327 aatg 330  Q
    ||||    
T  29693282 aatg 29693285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 53406597 - 53406489
Alignment:
Q  221 cattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctcta 320  Q
    |||||||||||||||||| || |||| |||| |||||||| |||   ||| ||||||||||||||||||||||||||| ||| |||||||||||||| |     
T  53406597 cattggtgtcattgatacctt-gtgtctatctctctcttaacaattcattttctcttatctaaataatttattttaattatttattcatcattttctttc 53406499  T
Q  321 atctaaaatg 330  Q
    ||||||||||    
T  53406498 atctaaaatg 53406489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 330
Target Start/End: Complemental strand, 29544269 - 29544162
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 322  Q
    |||||| |||||| || ||||||| |||| |||| ||| ||||  ||| ||| | ||||||||||||||||||||| ||||||| |||||||||||| ||    
T  29544269 ttggtgccattgacacctttgtgtctatctctctattaacaactcattctctatcatctaaataatttattttaatcattcatttatcattttctctcat 29544170  T
Q  323 ctaaaatg 330  Q
    ||||||||    
T  29544169 ctaaaatg 29544162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 330
Target Start/End: Complemental strand, 46079456 - 46079340
Alignment:
Q  214 ttggtatcattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcatt 313  Q
    ||||| ||||||||| ||||   || ||||||| ||||  ||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||||| ||||||    
T  46079456 ttggtgtcattggtgccattagcacatttgtgtctatctgtctcttaacaactcattctctctcatctaaataatttattttaatcattcattgatcatt 46079357  T
Q  314 ttctctaatctaaaatg 330  Q
     ||||| ||||||||||    
T  46079356 ctctctcatctaaaatg 46079340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 29724411 - 29724351
Alignment:
Q  268 attatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaa 328  Q
    ||||||||||||||||||||||||||||||| ||||||| || ||| ||| | ||||||||    
T  29724411 attatctcttatctaaataatttattttaatcattcatttattattctctatcatctaaaa 29724351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 40202300 - 40202260
Alignment:
Q  278 atctaaataatttattttaataattcattcatcattttctc 318  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  40202300 atctaaataatttattttaataattcattcatcattatctc 40202260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 53176872 - 53176929
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||| ||||||||||||||||||||| |||||||||| || |||| | |||||||||    
T  53176872 tctctcatctaaataatttattttaatcattcattcattatcttctgtcatctaaaat 53176929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 30643650 - 30643602
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctcta 320  Q
    ||||| ||||||||||||||||||||| |||||| ||||||| ||||||    
T  30643650 tctctcatctaaataatttattttaatcattcatccatcattatctcta 30643602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 44015473 - 44015413
Alignment:
Q  269 ttatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    |||||||| ||||||||||||||||||||| ||||||  |||||| | ||| |||||||||    
T  44015473 ttatctctcatctaaataatttattttaatcattcatctatcattctttctcatctaaaat 44015413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 1208745 - 1208706
Alignment:
Q  279 tctaaataatttattttaataattcattcatcattttctc 318  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  1208745 tctaaataatttattttaatcattcattcatcattctctc 1208706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 19473103 - 19473052
Alignment:
Q  278 atctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||||||||||||||||||| ||||||  ||||||||||||  ||||||||    
T  19473103 atctaaataatttattttaatcattcatgtatcattttctctcctctaaaat 19473052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 31455952 - 31455897
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaa 327  Q
    ||||| ||||||||||||||||||||| |||||||| ||||| ||| | |||||||    
T  31455952 tctctcatctaaataatttattttaatcattcattcttcattctctttcatctaaa 31455897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 52198377 - 52198438
Alignment:
Q  268 attatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||||||| ||| ||||||||||||||||| ||| ||  |||||| ||||| |||||||||    
T  52198377 attatctctcatcaaaataatttattttaatcatttatctatcattatctctcatctaaaat 52198438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 50041872 - 50041816
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaa 328  Q
    ||||| ||| ||||||||||||||||| ||||||  |||||| ||||| ||||||||    
T  50041872 tctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaa 50041816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 50049094 - 50049038
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaa 328  Q
    ||||| ||| ||||||||||||||||| ||||||  |||||| ||||| ||||||||    
T  50049094 tctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaa 50049038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 39728970 - 39729077
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 322  Q
    |||||| ||||||||||||||||| |||  || ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| ||||| ||    
T  39728970 ttggtgccattgatacttttgtgtctatttctttcttaccaacatattctctctcatctaaataatttattttaatcattcattcatcattctctctcat 39729069  T
Q  323 ctaaaatg 330  Q
    ||||||||    
T  39729070 ctaaaatg 39729077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 6752179 - 6752074
Alignment:
Q  225 ggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatct 324  Q
    |||||||||||||| | ||||| |||| |||||||| |||| || | ||||| ||||||||||||||||||||| ||||||| |||||| ||||| ||||    
T  6752179 ggtgtcattgatacctctgtgtctatctctctcttaacaacttactttctctcatctaaataatttattttaatcattcatttatcattctctctcatct 6752080  T
Q  325 aaaatg 330  Q
    ||||||    
T  6752079 aaaatg 6752074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 23395915 - 23396024
Alignment:
Q  221 cattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctcta 320  Q
    |||||||||||||| ||| ||||||| |||| |||||||| ||||  ||| ||| | ||||||||||||||||||||| ||||||| |||||| |||||     
T  23395915 cattggtgtcattggtacatttgtgtctatctctctcttaacaactcattctctatcatctaaataatttattttaatcattcatttatcattctctctc 23396014  T
Q  321 atctaaaatg 330  Q
    ||||||||||    
T  23396015 atctaaaatg 23396024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 330
Target Start/End: Complemental strand, 41069772 - 41069673
Alignment:
Q  231 attgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    |||||||| ||||||| ||||  ||||||| |||   ||| ||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  41069772 attgatacatttgtgtctatctgtctcttaacaattcattctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaatg 41069673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 11226132 - 11226237
Alignment:
Q  225 ggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatct 324  Q
    |||| ||||| ||| ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| |||||||| ||||| ||||| || |    
T  11226132 ggtgccattggtacctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcgtcattctctctcattt 11226231  T
Q  325 aaaatg 330  Q
    ||||||    
T  11226232 aaaatg 11226237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 31750448 - 31750553
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 322  Q
    |||||| ||||||||| ||||||| |||| |||||||| |||   ||| ||||| ||||||||  ||||||||||| |||||||||||||| ||| | ||    
T  31750448 ttggtgccattgatacctttgtgtctatctctctcttaacaattcattttctctcatctaaat--tttattttaatcattcattcatcattctctgtgat 31750545  T
Q  323 ctaaaatg 330  Q
    ||||||||    
T  31750546 ctaaaatg 31750553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 32832651 - 32832593
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    ||||| ||||||||||||||||||||| |||||| || |||| ||||| ||||||||||    
T  32832651 tctctcatctaaataatttattttaatcattcatccaacattctctctcatctaaaatg 32832593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 3496868 - 3496805
Alignment:
Q  240 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  3496868 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 3496805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 15141881 - 15141944
Alignment:
Q  240 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||||| |||| |||| ||| |||| |||| ||||| ||||||||||||||||||||| ||||    
T  15141881 tttgtgtctatctctcttttaacaacttattctctctcatctaaataatttattttaatcattc 15141944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 36562798 - 36562752
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctc 318  Q
    ||||| ||||||||||||||||||| | |||||||||||||| ||||    
T  36562798 tctctcatctaaataatttattttactcattcattcatcattctctc 36562752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 13477747 - 13477690
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||| || ||||||| |||||||||| |||||||||||||| ||||| ||| |||||    
T  13477747 tctctcatttaaataaattattttaatcattcattcatcattctctcttatccaaaat 13477690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 19037130 - 19037073
Alignment:
Q  246 tttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    |||||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  19037130 tttatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 19037073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 40204777 - 40204728
Alignment:
Q  280 ctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||||||||||||||||||||||||  |||||| ||||| || ||||||    
T  40204777 ctaaataatttattttaataattcatctatcattctctctcatgtaaaat 40204728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 48915085 - 48914985
Alignment:
Q  230 cattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||||||||||||||| |||| |||||||| ||||  ||| ||||| ||| ||||||||||||||||| |||||||||||||| ||||| |||||||||    
T  48915085 cattgatacttttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaat 48914986  T
Q  330 g 330  Q
    |    
T  48914985 g 48914985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 48915284 - 48915177
Alignment:
Q  221 cattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctcta 320  Q
    |||||||| ||||||||||||||||| |||| |||||||| ||||  ||| ||||| ||| ||||||||||||||||| ||||||||||||  ||||||     
T  48915284 cattggtgccattgatacttttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatca--ttctctc 48915187  T
Q  321 atctaaaatg 330  Q
    ||||||||||    
T  48915186 atctaaaatg 48915177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 330
Target Start/End: Complemental strand, 48915467 - 48915376
Alignment:
Q  239 ttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    |||||||| |||| |||||||| ||||  ||| ||||| ||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  48915467 ttttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaatg 48915376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 330
Target Start/End: Complemental strand, 19456417 - 19456310
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 322  Q
    ||||||||||||  || ||||||| |||| || ||||| |||   ||| ||||| ||||||||||||||||||||| ||  |||||||||| ||||| ||    
T  19456417 ttggtgtcattggcacctttgtgtctatctctttcttaacaattcattctctctcatctaaataatttattttaatcatctattcatcattctctctcat 19456318  T
Q  323 ctaaaatg 330  Q
    ||||||||    
T  19456317 ctaaaatg 19456310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 24671140 - 24671247
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 322  Q
    |||||||||||||||| ||||| |  |||  ||||||| | ||  ||| ||||| || |||||||||||||||||| |||||||||||| | ||||| ||    
T  24671140 ttggtgtcattgatacctttgtttccatctttctcttaaccactcattctctctcatttaaataatttattttaatcattcattcatcactctctctcat 24671239  T
Q  323 ctaaaatg 330  Q
    ||||||||    
T  24671240 ctaaaatg 24671247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 330
Target Start/End: Complemental strand, 50539835 - 50539728
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 322  Q
    ||||||| ||||| || ||||||| |||| |||||||| ||||  ||| ||| |||| |||||||||||||||||| ||  |||||||||| |||||  |    
T  50539835 ttggtgttattgacacctttgtgtctatctctctcttaacaactcattctcttttatttaaataatttattttaatcatctattcatcattatctctctt 50539736  T
Q  323 ctaaaatg 330  Q
    ||||||||    
T  50539735 ctaaaatg 50539728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 329
Target Start/End: Original strand, 26478546 - 26478652
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 322  Q
    |||||||||||| ||| ||||||| ||||  ||| ||| |||   ||||||| | || ||||| |||||||||||| |||||||||||||| ||||| ||    
T  26478546 ttggtgtcattggtacctttgtgtctatctttcttttaacaattcattatctttcatttaaatgatttattttaattattcattcatcattctctctcat 26478645  T
Q  323 ctaaaat 329  Q
    |||||||    
T  26478646 ctaaaat 26478652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 20717165 - 20717120
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttct 317  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  20717165 tctctaatctaaataatttattttaataatttattcatcattttct 20717120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 27032415 - 27032326
Alignment:
Q  214 ttggtatcattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||| ||||||||||||| | ||  ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  27032415 ttggtgtcattggtgtcatgggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 27032326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 49177424 - 49177483
Alignment:
Q  268 attatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaa 328  Q
    ||||||| | ||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  49177424 attatctttcatctaaataatttattttaatcattca-tcatcattttctctcatctaaaa 49177483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 5398080 - 5398034
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctc 318  Q
    ||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  5398080 tctctcatctaaatagtttattttaataattcattcatcattctctc 5398034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 27907685 - 27907767
Alignment:
Q  221 cattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    |||||||||||| | ||  ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  27907685 cattggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 27907767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 19431448 - 19431391
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||| ||||||||||||||||||||| |||||| ||||||| | ||| |||||||||    
T  19431448 tctctcatctaaataatttattttaatcattcatccatcattctgtctcatctaaaat 19431391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 49177278 - 49177334
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    ||||| ||||||||||||||||||||||||| |||||  || |||||| ||||||||||    
T  49177278 tctctcatctaaataatttattttaataatttattca--atattctctcatctaaaatg 49177334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 25586867 - 25586916
Alignment:
Q  270 tatctcttatctaaataatttattttaataattcattcatcattttctct 319  Q
    |||||||||| | |||||||||||||||  ||||||| ||||||||||||    
T  25586867 tatctcttatttgaataatttattttaaatattcattgatcattttctct 25586916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 3950343 - 3950295
Alignment:
Q  282 aaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    ||||||||||||||||| ||||||  |||||| ||||| ||||||||||    
T  3950343 aaataatttattttaatcattcatcgatcattctctctcatctaaaatg 3950295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 10688592 - 10688699
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 322  Q
    |||||| ||||| ||| ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| |||||||||||||| ||||| ||    
T  10688592 ttggtgccattggtacctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcatcattctctctcat 10688691  T
Q  323 ctaaaatg 330  Q
    ||||||||    
T  10688692 ctaaaatg 10688699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 49279464 - 49279553
Alignment:
Q  214 ttggtatcattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||| ||||||||||||| | ||  ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  49279464 ttggtgtcattggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 49279553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 47548868 - 47548927
Alignment:
Q  271 atctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    |||||| ||||||||||||||||||||| || |||||| |||| ||||| ||||||||||    
T  47548868 atctctcatctaaataatttattttaatcatccattcaacattctctctcatctaaaatg 47548927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 46348450 - 46348392
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    ||||| || |||||| ||||| |||||||||||||||||||| ||||| ||||||||||    
T  46348450 tctctcatttaaatagtttatcttaataattcattcatcattctctctcatctaaaatg 46348392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 39488539 - 39488495
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttc 316  Q
    |||||| | |||||||||||||||||| |||||||||||||||||    
T  39488539 tctcttttttaaataatttattttaattattcattcatcattttc 39488495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 4037142 - 4037205
Alignment:
Q  240 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  4037142 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 4037205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 11233507 - 11233570
Alignment:
Q  240 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  11233507 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 11233570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 50700003 - 50700103
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 322  Q
    |||||||||||| ||| |||||||  ||| ||||||||   ||| ||| |||||  |||||||||||||||||||| ||| ||||||||  |||||| ||    
T  50700003 ttggtgtcattggtacatttgtgt--atctctctctta---acacattctctctcgtctaaataatttattttaatcatttattcatca--ttctctcat 50700095  T
Q  323 ctaaaatg 330  Q
    ||||||||    
T  50700096 ctaaaatg 50700103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 39485528 - 39485470
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    ||||| ||||||||||||||||||||| |||||| || | || ||||| ||||||||||    
T  39485528 tctctcatctaaataatttattttaatcattcatccaaccttctctctcatctaaaatg 39485470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 42467008 - 42466974
Alignment:
Q  279 tctaaataatttattttaataattcattcatcatt 313  Q
    |||||||||||||||||||| ||||||||||||||    
T  42467008 tctaaataatttattttaattattcattcatcatt 42466974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 16278813 - 16278862
Alignment:
Q  280 ctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||||||||||||||||| |||||| ||||||| | ||| |||||||||    
T  16278813 ctaaataatttattttaattattcatccatcattctttcttatctaaaat 16278862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 2651618 - 2651692
Alignment:
Q  235 atacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcat 309  Q
    ||||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||| ||||||||||    
T  2651618 atacttttgtgtttatctctctcttaccaacatattctatctcatctaaataatttattttaatcattcattcat 2651692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 27554995 - 27554924
Alignment:
Q  258 ttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||||||||||| ||||| ||||||||||| ||||||||| ||| |||||||||||||||| |||||||||    
T  27554995 ttaccaacatattttctctcatctaaataatctattttaattatttattcatcattttctctcatctaaaat 27554924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 22658818 - 22658918
Alignment:
Q  229 tcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaa 328  Q
    |||||||||||||||| |||||| |||| ||| ||||||| | | | | || |||||||||||||||||| |||||||||||||| ||| | ||||||||    
T  22658818 tcattgatacttttgt-tttatctctctgttagcaacatactttttttcatttaaataatttattttaatcattcattcatcattctctttcatctaaaa 22658916  T
Q  329 tg 330  Q
    ||    
T  22658917 tg 22658918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 34928806 - 34928885
Alignment:
Q  253 ctctcttaccaacatattatctctt--atctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    |||||||| |||| |||| ||||||  ||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||    
T  34928806 ctctcttaacaacttattctctctttcatctaaataatttattttaatcattcatttatcattctctctcatctaaaatg 34928885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 14151993 - 14151942
Alignment:
Q  279 tctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    |||||||||||||||||||| |||||||||| ||| ||||| ||||||||||    
T  14151993 tctaaataatttattttaatcattcattcattattatctctcatctaaaatg 14151942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 33953161 - 33953218
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||| ||||||||||||||||||||| |||||| || |||| ||||| |||||||||    
T  33953161 tctctcatctaaataatttattttaattattcatccaccattctctctcatctaaaat 33953218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 18267916 - 18267856
Alignment:
Q  268 attatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaa 328  Q
    ||||||| |||| |||||||||||||||||| ||| || ||||||| ||||| ||||||||    
T  18267916 attatcttttatttaaataatttattttaattattaatccatcattctctcttatctaaaa 18267856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 18623644 - 18623597
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctct 319  Q
    ||||||||||||||||||||||||||| ||||||  |||||| |||||    
T  18623644 tctcttatctaaataatttattttaatcattcatctatcattctctct 18623597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 37515652 - 37515589
Alignment:
Q  240 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||||| |||| |||||||| ||||  ||||||| | ||||||||||||||||||||| ||||    
T  37515652 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 37515589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 22653513 - 22653571
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    ||||||||||||||||| ||||||||| |||||| ||| ||| | ||| ||||||||||    
T  22653513 tctcttatctaaataatctattttaatcattcatccattattctttctcatctaaaatg 22653571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 19824617 - 19824674
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||| ||||||||||||||||||||| ||||||  | |||| ||||| |||||||||    
T  19824617 tctctcatctaaataatttattttaatcattcatctaacattctctctcatctaaaat 19824674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 14281862 - 14281810
Alignment:
Q  278 atctaaataatttattttaata-attcattcatcattttctctaatctaaaat 329  Q
    |||||||||||||||||||||| ||||||  |||||| ||||| |||||||||    
T  14281862 atctaaataatttattttaatacattcatctatcattctctctcatctaaaat 14281810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 2628536 - 2628436
Alignment:
Q  230 cattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||||||||||||||| |||| |||||||| ||||  ||| ||||| ||||||||| ||||||||||| ||| |||||||||| ||||| |||||||||    
T  2628536 cattgatacttttgtgtctatctctctcttaacaactcattctctctcatctaaatagtttattttaatcatttattcatcattctctctcatctaaaat 2628437  T
Q  330 g 330  Q
    |    
T  2628436 g 2628436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 330
Target Start/End: Complemental strand, 9488877 - 9488769
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcatt-ttctctaa 321  Q
    |||||| ||||||||| ||||||| |||| |||||||| ||||  |||  || || |||||||||||||||||||| |||||||||||||| | |||| |    
T  9488877 ttggtgccattgatacctttgtgtatatctctctcttaacaactcattccctattctctaaataatttattttaatcattcattcatcattctcctctca 9488778  T
Q  322 tctaaaatg 330  Q
    |||||||||    
T  9488777 tctaaaatg 9488769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 32279352 - 32279294
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  32279352 tctctcatttaaataatttattttaattattcattcatcattttctctcatctaaaatg 32279294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 33747989 - 33748030
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcatt 313  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  33747989 tctcttatctaaataatttattttaattgttcattcatcatt 33748030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 16876806 - 16876743
Alignment:
Q  240 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  16876806 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 16876743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 18868017 - 18867954
Alignment:
Q  240 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  18868017 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 18867954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 23185992 - 23185929
Alignment:
Q  240 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  23185992 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 23185929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 46425407 - 46425344
Alignment:
Q  240 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  46425407 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 46425344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 37685248 - 37685190
Alignment:
Q  272 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 330  Q
    ||||| ||||||||||||||||||||| |||||| || |||| |||||  |||||||||    
T  37685248 tctctcatctaaataatttattttaatcattcatccaacattctctctcgtctaaaatg 37685190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 15667897 - 15667938
Alignment:
Q  268 attatctcttatctaaataatttattttaataattcattcat 309  Q
    ||||||||| || |||||||||||||||||| ||||||||||    
T  15667897 attatctctcatttaaataatttattttaatcattcattcat 15667938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 32204771 - 32204832
Alignment:
Q  268 attatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||||||| || |||||||||||||||||| ||| ||  ||||| |||||| |||||||||    
T  32204771 attatctctcatataaataatttattttaatcatttatctatcatcttctctcatctaaaat 32204832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 34328091 - 34328169
Alignment:
Q  223 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    |||||||||| ||||  ||||||| ||||  ||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  34328091 ttggtgtcatagataactttgtgtctatc--tctcttaacaactcattctctctcatctaaataatttattttaatcattc 34328169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 43368538 - 43368497
Alignment:
Q  278 atctaaataatttattttaataattcattcatcattttctct 319  Q
    ||||||||||||||||||||| |||||| ||||||| |||||    
T  43368538 atctaaataatttattttaatcattcatccatcattctctct 43368497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 26847168 - 26847230
Alignment:
Q  267 tattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    |||||||||||||||||||||||||||||| | ||||||  |||||| ||||| |||||||||    
T  26847168 tattatctcttatctaaataatttattttactcattcatctatcattctctctcatctaaaat 26847230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 457683 - 457739
Alignment:
Q  273 ctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    |||| ||||||||||||||||||||| |||||| ||||||| ||||| |||||||||    
T  457683 ctctcatctaaataatttattttaatcattcatccatcattctctctcatctaaaat 457739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 31743843 - 31743922
Alignment:
Q  222 attggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||||||||| |||| |||||||| |||| |||| ||| |||| |||| ||||  ||||||||||||||||||||| ||||    
T  31743843 attggtgtcatagatagttttgtgtctatctctcttttaacaacttattctctc--atctaaataatttattttaatcattc 31743922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 9928262 - 9928325
Alignment:
Q  240 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  9928262 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 9928325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 24226101 - 24226148
Alignment:
Q  282 aaataatttattttaataattcattcatcattttctctaatctaaaat 329  Q
    ||||||||||||||||| ||||||  |||||||||||| |||||||||    
T  24226101 aaataatttattttaatcattcatctatcattttctctcatctaaaat 24226148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 9549369 - 9549436
Alignment:
Q  240 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcat 309  Q
    ||||||||||||  ||||||| ||||  ||| ||||| || |||||||||||||||||| ||||||||||    
T  9549369 tttgtgtttatc--tctcttaacaactcattctctctaatttaaataatttattttaatcattcattcat 9549436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 7506639 - 7506696
Alignment:
Q  246 tttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    |||||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  7506639 tttatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 7506696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 22469674 - 22469763
Alignment:
Q  214 ttggtatcattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 303  Q
    ||||| ||||||||| ||| | ||  ||||||| |||| || ||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  22469674 ttggtgtcattggtgccataggtaactttgtgtctatctctttcttaacaactcattctctctcatctaaataatttattttaatcattc 22469763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 20314 - 20355
Alignment:
Q  268 attatctcttatctaaataatttattttaataattcattcat 309  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  20314 attatctctcatctaaataatttattttaatcattcattcat 20355  T

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