View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14999_low_13 (Length: 343)
Name: NF14999_low_13
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14999_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 328
Target Start/End: Original strand, 47814006 - 47814318
Alignment:
| Q |
17 |
actagcaatgatttaaattgagaaatttgatttatcattcacatgccttatagttttgtattgcattttgagactaactttcactttgagccttcataaa |
116 |
Q |
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| T |
47814006 |
actagcaatgatttaaattgagaaatttgatttatcattcacatgccttatagttttgtattgcattttgagactaactttcactttgagccttcataaa |
47814105 |
T |
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| Q |
117 |
tagtgggaagtttcaaaagaaatgtaatttaactgtacacagattgtatgaatgcaagaacaca-tttaattatatatttcatgtgaattacttgtttga |
215 |
Q |
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| T |
47814106 |
tagtgggaagtttcaaaagaaatgtaatttaactgtacacagattgtatgaatgcaagaacacattttaattatatatttcatgtgaattacttgtttga |
47814205 |
T |
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| Q |
216 |
taatatattttttcatcaatgaatgcagtgaacaatctaagaatcatgtctagggttttggcacagttgattaacatccccggcctagtggctgatcgaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
47814206 |
taatatattttttcatcaatgaatgcagtgaacaatctaagaatcatgtctagggttttggcacagtcgattaacatccccggcctagtggctggtcgaa |
47814305 |
T |
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| Q |
316 |
ggcatgtcagaat |
328 |
Q |
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| T |
47814306 |
ggcatgtcagaat |
47814318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 32 - 324
Target Start/End: Original strand, 47378422 - 47378726
Alignment:
| Q |
32 |
aattgagaaatttgatttatcattcacatgccttatagttttgtattgcattttga--gactaactttcactttgagccttcataaatagtgggaagttt |
129 |
Q |
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| T |
47378422 |
aattgaaaaatttgatttatcattcatatgccttatagttttgtattgcattctgattgactaactttcactttgagccctcgt---ttgtgggaagttt |
47378518 |
T |
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| Q |
130 |
caaaagaaatgtaatttaactgtacacagattgtatgaatgcaagaacacatttaattata-------------tatttcatgtgaattacttgtttgat |
216 |
Q |
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| T |
47378519 |
caaaagaaatgtaatttatctgtacatttattgtaagaatgcaagtacacatttaattatacggggcagtgtgttatttcatttgaattacatgtttgct |
47378618 |
T |
|
| Q |
217 |
aatatattttttcatcaatgaatgcagtgaacaatctaagaatcatgtctagggttttggcacagttgattaacatccccggcctagtggctgatcgaag |
316 |
Q |
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| T |
47378619 |
gatatattttttcatcaacgaatgcagtgaacaattccggaatcatgtctagggttttggcacagtcgattaatgtccccggcctagtggctggtcgaag |
47378718 |
T |
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| Q |
317 |
gcatgtca |
324 |
Q |
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| T |
47378719 |
gcatgtca |
47378726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 324
Target Start/End: Original strand, 40241693 - 40241821
Alignment:
| Q |
197 |
atgtgaattacttgtttgataatatattttttcatcaatgaa-tgcagtgaacaatctaagaatcatgtctagggttttggcacagttgattaacatccc |
295 |
Q |
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|||||||||| |||| || |||||| ||||| || ||||| || ||||||||||| | ||||||||||||||| |||||| |||| |||||| |||| |
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| T |
40241693 |
atgtgaattaattgtctgctaatatgcttttttatggatgaaatgtagtgaacaatccaggaatcatgtctagggctttggcgcagtcgattaatgtccc |
40241792 |
T |
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| Q |
296 |
cggcctagtggctgatcgaaggcatgtca |
324 |
Q |
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| T |
40241793 |
tggtctagtggctggtcgaaggcatgtca |
40241821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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