View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14999_low_14 (Length: 319)
Name: NF14999_low_14
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14999_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 39177690 - 39177994
Alignment:
| Q |
1 |
atccattcttatctgttaacataactatnnnnnnntggggataggaaaggtaatcaatgtttacatttactataatcaactaatcatgttacattgagga |
100 |
Q |
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| T |
39177690 |
atccattcttatctgttaacataactataaaaaaacggggatgggaaaggtaatcaatgtttacatttactataatcaactaatcatgttacattgagga |
39177789 |
T |
|
| Q |
101 |
catactggatagataacaannnnnnnnnnnnnatagttgttttctgctcttccgtcggtgaggtggcaaatagatcctcaaatgcgacgtaaagatctct |
200 |
Q |
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| T |
39177790 |
catactggatggataacaatttttttttt---atagttgttttctgctcttccgtcagtgaggtggcaaatagaacctcaaatgcgacgtaaagatctct |
39177886 |
T |
|
| Q |
201 |
tttctcctttctcatatccagtggcatgccctctcctttgaacttcctcacttgctttggatttgtgtttctctaagggttcaaagaagtatgtcagatc |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39177887 |
tttctcctttctcatatccagtggcat-ccctctcctttgaacttcctcacttgctttggatttgtgtttctctaagggttcaaagaagtatgtcagatc |
39177985 |
T |
|
| Q |
301 |
tgcgccttt |
309 |
Q |
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||||||||| |
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| T |
39177986 |
tgcgccttt |
39177994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 39168178 - 39168256
Alignment:
| Q |
200 |
ttttctcctttctcatatccagtggcatgccctctcctttgaacttcctcac-ttgctttggatttgtgtttctctaag |
277 |
Q |
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||||||| ||||||||| ||||| ||||||||||||| |||||||| |||| |||||||||||||||| ||| ||||| |
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| T |
39168178 |
ttttctcttttctcataagcagtgacatgccctctcctctgaacttcttcactttgctttggatttgtgattccctaag |
39168256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 285
Target Start/End: Complemental strand, 44691574 - 44691465
Alignment:
| Q |
176 |
cctcaaatgcgacgtaaagatctcttttctcctttctcatatccagtggcatgccctctcctttgaacttcctcacttgctttggatttgtgtttctcta |
275 |
Q |
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||||||| | |||||||||||||| ||||| | | ||| ||| || |||||| ||||| ||||||||||||||||||||||| ||||||||| ||| || |
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| T |
44691574 |
cctcaaaagtgacgtaaagatctcctttcttcgtgctcgtatgcaatggcataccctcccctttgaacttcctcacttgcttcggatttgtgattccctg |
44691475 |
T |
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| Q |
276 |
agggttcaaa |
285 |
Q |
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|||| ||||| |
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| T |
44691474 |
agggatcaaa |
44691465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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