View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14999_low_16 (Length: 290)
Name: NF14999_low_16
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14999_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 10019857 - 10019600
Alignment:
| Q |
15 |
cacagacattaaattttgagtaaaaaattaacactattgttcgtaatttataaacattaatgtaataaaaaagatcaattggacgaacatgtgtctacat |
114 |
Q |
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| T |
10019857 |
cacaaacattaaattttgagtaaaaaattaacactattgttcgtaatttataaacattaatgtaataaaaaagatcaattggacgaacatgtgtctacat |
10019758 |
T |
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| Q |
115 |
gaatactagtaacaatatcccgatgctagtaacattgacaaatatataattttttgtttgttttcaccctagcatataccacaaattattttatcctatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10019757 |
gaatactagtaacaatatcccgatgctagtaacattgacaaatatataattttttgtttgttttcaccctagcatataccacaaattattttatcctatg |
10019658 |
T |
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| Q |
215 |
atatcaaactctgttatcggtcaaatccgtaaatttaaataaaacacattaatcattt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10019657 |
atatcaaactctgttatcggtcaaatccgtaaatttaaataaaacacattaatcattt |
10019600 |
T |
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Back To:
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Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 3330954 - 3330695
Alignment:
| Q |
15 |
cacagacattaaattttgagtaaaaaattaacactattgttcgtaatttataaacattaatgtaataaaaaa-gatcaattggacgaacatgtgtctaca |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3330954 |
cacaaacattaaattttgagtaaaaaattaacactattgttcgtaatttataaacattaatgtaataaaaaaagatcaattggacgaacatgtgtctaca |
3330855 |
T |
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| Q |
114 |
tgaatactagtaacaatatcccgatgctagtaacattgacaaatatataattttttgttt-gttttcaccctagcatataccacaaattattttatccta |
212 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3330854 |
tgaatactagtaacaatatcccaatgctagtaacattgacaaatatataattttttgttttgttttcaccctagcatataccacaaattattttatccta |
3330755 |
T |
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| Q |
213 |
tgatatcaaactctgttatcggtcaaatccgtaaatttaaataaaacacattaatcattt |
272 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
3330754 |
tgatatcaaactctgttattggtgaaatccgtaaatttaaataaaacacattaatcattt |
3330695 |
T |
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