View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14999_low_19 (Length: 277)
Name: NF14999_low_19
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14999_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7668441 - 7668206
Alignment:
| Q |
1 |
taattttctcggcaccaagttcacgatcttggatggtcatcctccacatgtttcttcgcttccatcgagttgcaagttgcaacaaaaggtccatatatga |
100 |
Q |
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| T |
7668441 |
taattttctcggcaccaagttcacgatcttggatggtcatcctccacatgtttcttcgcttccatcgagttgcaagttgcaacaaaaggtccatatatga |
7668342 |
T |
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| Q |
101 |
agcaagtatttcctagggttgctcctgctactgctagctataaagtagccctaacaggagcagtcccaagtgtgtgtaatgctagctgtttaggattaat |
200 |
Q |
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| T |
7668341 |
agcaagtatttcctagggttgctcctgctactgctagctataaagtagccctaacaggagcagtcccaagtgtgtgtaatgctagctgtttaggattaat |
7668242 |
T |
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| Q |
201 |
gtttagggctagggctgctcctgctactgctagggct |
237 |
Q |
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| T |
7668241 |
gtttagggcta-ggctgctcctgctactgctagggct |
7668206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 7089099 - 7088953
Alignment:
| Q |
1 |
taattttctcggcaccaagttcacgatcttggatggtcatcctccacatgtttcttcgcttccatcgagttgcaagttgcaacaaaaggtccatatatga |
100 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
7089099 |
taattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtcttcgcttccatcgagttgcaagttgcaacaaaaggttc--atatga |
7089002 |
T |
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| Q |
101 |
agcaagtatttcctagggttgctcctgctactgctagctataaagtagc |
149 |
Q |
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| T |
7089001 |
agcaagtacttccaagggctgctcctgctcctgctaactataaagtagc |
7088953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 7668122 - 7668077
Alignment:
| Q |
160 |
gcagtcccaagtgtgtgtaatgctagctgtttaggattaatgttta |
205 |
Q |
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| T |
7668122 |
gcagtcccaagtgtgtgtaatgctagctgtttaggattaatgttta |
7668077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 7088367 - 7088322
Alignment:
| Q |
160 |
gcagtcccaagtgtgtgtaatgctagctgtttaggattaatgttta |
205 |
Q |
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| T |
7088367 |
gcaggcccaagtttgtgtaatgctagatgtttaggattaatgttta |
7088322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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