View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14999_low_24 (Length: 249)
Name: NF14999_low_24
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14999_low_24 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 29240597 - 29240836
Alignment:
| Q |
10 |
aatatgtgacaccatatgctcaagatgtaaaaatcaagtacatcactgttggaaatgaaattaaacctaatgacaatgaagcccaatacattgccactgc |
109 |
Q |
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| T |
29240597 |
aatatgtgacaccatatgctcaagatgtaaaaatcaagtacatcactgttggaaatgaaattaaacctaatgacaatgaagcccaatacattgccactgc |
29240696 |
T |
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| Q |
110 |
catgcaaaacattcaaaatgcaatttcatcagcaaatttacaaggccaaatcaaggtctcaacagcaattgacatgactttgattggtacttcatatcca |
209 |
Q |
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| T |
29240697 |
catgcaaaacattcaaaatgcaatttcatcagcaaatttacaaggccaaatcaaggtctcaacagcaattgacatgactttgattggtacttcatatcca |
29240796 |
T |
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| Q |
210 |
cccaatgatggtgctttcactgaccaagcaaagcaatatt |
249 |
Q |
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| T |
29240797 |
cccaatgatggtgctttcactgaccaagcaaagcaatatt |
29240836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 29250873 - 29251102
Alignment:
| Q |
12 |
tatgtgacaccatatgctcaagatgtaaaaatcaagtacatcactgttggaaatgaaattaaacctaatgacaatgaagcccaatacattgccactgcca |
111 |
Q |
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| T |
29250873 |
tatgtgacaccctatgctcaagatgtaaaaatcaagtacatcactgttggaaatgaaattaaacctaatgacaatgaagcccaatacattgccactgcca |
29250972 |
T |
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| Q |
112 |
tgcaaaacattcaaaatgcaatttcatcagcaaatttacaaggccaaatcaaggtctcaacagcaattgacatgactttgattggtacttcatatccacc |
211 |
Q |
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| T |
29250973 |
tgcagaacattcaaaatgcaatttcatctgcaaatttacaaggccaaatcaaggtctcaacagcaattgacatgactttgattggtaattcatatccacc |
29251072 |
T |
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| Q |
212 |
caatgatggtgctttcactgaccaagcaaa |
241 |
Q |
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| T |
29251073 |
caatgctggagttttcactgatcaagcaaa |
29251102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 29225421 - 29225652
Alignment:
| Q |
10 |
aatatgtgacaccatatgctcaagatgtaaaaatcaagtacatcactgttggaaatgaaattaaacctaatgacaatgaagcccaatacattgccactgc |
109 |
Q |
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| T |
29225421 |
aatatgtgagaccctatgctcaaaatgtaaaaatcaagtacatcagtgttggaaatgaaattaaacctaatgacaatgaggcccaatacattctccctgc |
29225520 |
T |
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| Q |
110 |
catgcaaaacattcaaaatgcaatttcatcagcaaatttacaaggccaaatcaaggtctcaacagcaattgacatgactttgattggtacttcatatcca |
209 |
Q |
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| T |
29225521 |
catgcaaaacattcaaaatgcaatttcatctgcaaatttacaaggccaaatcaaggtctcaacagcaatagacatgactttgattggtaagtcatttcca |
29225620 |
T |
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| Q |
210 |
cccaatgatggtgctttcactgaccaagcaaa |
241 |
Q |
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| T |
29225621 |
cccaatgatggtgttttcagtgaccaagcaaa |
29225652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 29230086 - 29230316
Alignment:
| Q |
11 |
atatgtgacaccatatgctcaagatgtaaaaatcaagtacatcactgttggaaatgaaattaaacctaatgacaatgaagcccaatacattgccactgcc |
110 |
Q |
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| T |
29230086 |
atatgtgaaaccctatgctcgagatgttaaaatcaagtacatcactgtcggaaatgaaattaaaccttacgacagtgaagcacaatccattctccctgcc |
29230185 |
T |
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| Q |
111 |
atgcaaaacattcaaaatgcaatttcatcagcaaatttacaaggccaaatcaaggtctcaacagcaattgacatgactttgattggtacttcatatccac |
210 |
Q |
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| T |
29230186 |
atgcaaaacattcaaaatgctatttcagcagccaatttacagggacaaatcaaggtctcaatagcaattgacatgactttgattggtaattcatatccac |
29230285 |
T |
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| Q |
211 |
ccaatgatggtgctttcactgaccaagcaaa |
241 |
Q |
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| T |
29230286 |
ccaataatggtgttttcactgaccaagcaaa |
29230316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 29218196 - 29218250
Alignment:
| Q |
106 |
ctgccatgcaaaacattcaaaatgcaatttcatcagcaaatttacaaggccaaat |
160 |
Q |
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| T |
29218196 |
ctgcaatgcaaaacattcaaaaagcaatatcttcagcaaatttacaaggccaaat |
29218250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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