View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14999_low_25 (Length: 247)
Name: NF14999_low_25
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14999_low_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 3961091 - 3960858
Alignment:
| Q |
21 |
ggacgaatcggctaaccatctttttatccattgtgaaaaggtgattgatatttggtataaggtgattatgtggtc-gaaatctgtttcataaatccacct |
119 |
Q |
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| T |
3961091 |
ggacgaatcggctaaccatcattttatccattgtgaaaaggtgattgatatttggtataaggtgattatgtggttagaaatctgtttcatatatcctcct |
3960992 |
T |
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| Q |
120 |
aacttg------cattgggagtgttgaagtttagaaggtagaaacaagaggatccggaagggtttgcatcttatttggcatgcaacgatttcggccattt |
213 |
Q |
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| T |
3960991 |
aacttgtttgtgcattgggagtgttggagtttaaaaggtagaaacaagaggatccagaaggatttgcgtcttatttggcatgcaatgatttgggccattt |
3960892 |
T |
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| Q |
214 |
ggcaaacgaggaatcaaatcatttttaagaacga |
247 |
Q |
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| T |
3960891 |
ggcaagcgagaaatcaaatcatttttaagaacga |
3960858 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 9359539 - 9359434
Alignment:
| Q |
124 |
tgcattgggagtgttgaagtttagaaggtagaaacaagaggatccggaagggtttgcatcttatttggcatgcaacgatttcggccatttggcaaacgag |
223 |
Q |
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| T |
9359539 |
tgcattgggcatgttggagtattgaagggagaaacaagaagattcgcaaggggttgtggattatttggcatgcaactatttgggctatttggcaagctag |
9359440 |
T |
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| Q |
224 |
gaatca |
229 |
Q |
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| T |
9359439 |
gaatca |
9359434 |
T |
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