View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14999_low_26 (Length: 243)
Name: NF14999_low_26
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14999_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29240852 - 29241078
Alignment:
| Q |
1 |
acttcctaaagaacaatggagcaccacttcttgccaatgtgtatccgtacttcgcttatatcggtaataagcaaagcatttctcttgactatgctctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240852 |
acttcctaaagaacaatggagcaccacttcttgccaatgtgtatccgtacttcgcttatatcggtaataagcaaagcatttctcttgactatgctctttt |
29240951 |
T |
|
| Q |
101 |
taaacaacaaggaaacaatgatgttgggtaccaaaacctctttgatgcccaattagactcagtatatgctgctcttgagaaagttgggggtaccgatgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240952 |
taaacaacaaggaaacaatgatgttgggtaccaaaacctctttgatgcccaattagactcagtatatgctgctcttgagaaagttgggggtaccgatgtg |
29241051 |
T |
|
| Q |
201 |
aagatagttgtgtccgagagtggatgg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
29241052 |
aagatagttgtgtccgagagtggatgg |
29241078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29230340 - 29230562
Alignment:
| Q |
1 |
acttcctaaagaacaatggagcaccacttcttgccaatgtgtatccgtacttcgcttatatcggtaataagcaaagcatttctcttgactatgctctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |
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| T |
29230340 |
acttcctaaagaacaatggagcaccacttcttgccaatgtgtatccgtacttcgcttatatcaataataaacaaagcatttctcttgattatgctctttt |
29230439 |
T |
|
| Q |
101 |
taaacaacaaggaaacaatgatgttgggtaccaaaacctctttgatgcccaattagactcagtatatgctgctcttgagaaagttgggggtaccgatgtg |
200 |
Q |
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|| |||||||||||||||| | ||||| |||| |||||| ||||||||||| ||||| |||||||| |||||||||||||||||||| | | ||| |||| |
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| T |
29230440 |
tagacaacaaggaaacaatcaagttggttaccgaaacctttttgatgcccagttagattcagtatacgctgctcttgagaaagttggcgcttccggtgtg |
29230539 |
T |
|
| Q |
201 |
aagatagttgtgtccgagagtgg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
29230540 |
aagatagttgtgtccgagagtgg |
29230562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 29251140 - 29251352
Alignment:
| Q |
15 |
aatggagcaccacttcttgccaatgtgtatccgtacttcgcttatatcggtaataagcaaagcatttctcttgactatgctctttttaaacaacaaggaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29251140 |
aatggagcaccacttcttgccaatgtgtatccgtacttcgcttatattggtaataaacaaagcatttctcttgactatgttctttttaaacaacaaggaa |
29251239 |
T |
|
| Q |
115 |
acaatgatgttgggtaccaaaacctctttgatgcccaattagactcagtatatgctgctcttgagaaagttgggggtaccgatgtgaagatagttgtgtc |
214 |
Q |
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||||||| ||||||||| | ||| ||||||||||| ||||| |||||||| |||||||||||||||||||| ||| || ||||||||||||||||||| |
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| T |
29251240 |
acaatgaagttgggtacaacaacatctttgatgccatgttagattcagtatacgctgctcttgagaaagttggaggttccaatgtgaagatagttgtgtc |
29251339 |
T |
|
| Q |
215 |
cgagagtggatgg |
227 |
Q |
| |
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||||||||||||| |
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| T |
29251340 |
cgagagtggatgg |
29251352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29225676 - 29225898
Alignment:
| Q |
1 |
acttcctaaagaacaatggagcaccacttcttgccaatgtgtatccgtacttcgcttatatcggtaataagcaaagcatttctcttgactatgctctttt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| || |||| ||||||||||||||||||| |
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| T |
29225676 |
acttcctaaacaacaatggagcaccacttcttgctaatgtgtatccgtacttcgcttatattggtgataaggtaaacattcctcttgactatgctctttt |
29225775 |
T |
|
| Q |
101 |
taaacaacaaggaaacaatgatgttgggtaccaaaacctctttgatgcccaattagactcagtatatgctgctcttgagaaagttgggggtaccgatgtg |
200 |
Q |
| |
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|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| | | ||| ||| |
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| T |
29225776 |
tagacaacaaggaaacaatgcagttggttaccaaaacctctttgatgcccaattagactcagtatacgccgctcttgaaaaagttggcgcttccggtgtt |
29225875 |
T |
|
| Q |
201 |
aagatagttgtgtccgagagtgg |
223 |
Q |
| |
|
|||||||||||||| |||||||| |
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| T |
29225876 |
aagatagttgtgtctgagagtgg |
29225898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 29253447 - 29253245
Alignment:
| Q |
21 |
gcaccacttcttgccaatgtgtatccgtacttcgcttatatcggtaataagcaaagcatttctcttgactatgctctttttaaacaacaaggaaacaatg |
120 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||||||||||||| || |||| |||| ||||||| | ||||||||||||||||||||||||||||| |
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| T |
29253447 |
gcaccacttcttgcaaatgtgcatccgtacttcgcttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
29253348 |
T |
|
| Q |
121 |
atgttgggtaccaaaacctctttgatgcccaattagactcagtatatgctgctcttgagaaagttgggggtaccgatgtgaagatagttgtgtccgagag |
220 |
Q |
| |
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||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| |||||||| || ||| | ||||||||| || ||||| ||||| |
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| T |
29253347 |
cagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaagtgggcggttctagtgtgaagattgtagtgtctgagag |
29253248 |
T |
|
| Q |
221 |
tgg |
223 |
Q |
| |
|
||| |
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|
| T |
29253247 |
tgg |
29253245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 29218426 - 29218577
Alignment:
| Q |
72 |
caaagcatttctcttgactatgctctttttaaacaacaaggaaacaatgatgttgggtaccaaaacctctttgatgcccaattagactcagtatatgctg |
171 |
Q |
| |
|
||||||||| ||||||||||||| | |||| | |||| ||||| ||||| ||||| ||||||||| | |||||||| || || ||| | ||||||| |
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| T |
29218426 |
caaagcattggtcttgactatgctttgtttacaaaacagggaaagaatgaagttggttaccaaaacttgtttgatgcaatgttggattcaatttatgctg |
29218525 |
T |
|
| Q |
172 |
ctcttgagaaagttgggggtaccgatgtgaagatagttgtgtccgagagtgg |
223 |
Q |
| |
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||||||||||||| |||||| | |||||||||| |||||||| |||||||| |
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| T |
29218526 |
ctcttgagaaagtagggggttcaaatgtgaagattgttgtgtctgagagtgg |
29218577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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