View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14999_low_27 (Length: 224)
Name: NF14999_low_27
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14999_low_27 |
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| [»] scaffold0790 (1 HSPs) |
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Alignment Details
Target: scaffold0790 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0790
Description:
Target: scaffold0790; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 2787 - 2861
Alignment:
| Q |
11 |
gaagcaaaggtctaccatggatttggaatatttatcatcagttttgcaaagtaaagaggcttcaagattgtgagaggttt |
90 |
Q |
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| T |
2787 |
gaagcaaagatctatcatggatttggaatat-----atcagttttacaaagtaaagaggcttcaagattgtgagaggttt |
2861 |
T |
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