View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14999_low_5 (Length: 469)

Name: NF14999_low_5
Description: NF14999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14999_low_5
NF14999_low_5
[»] chr7 (6 HSPs)
chr7 (67-460)||(37580737-37581134)
chr7 (152-316)||(37480685-37480857)
chr7 (152-316)||(6778583-6778755)
chr7 (152-316)||(6774296-6774468)
chr7 (219-316)||(37476241-37476335)
chr7 (402-431)||(37466497-37466526)
[»] chr4 (3 HSPs)
chr4 (222-316)||(55118878-55118972)
chr4 (160-197)||(52791814-52791851)
chr4 (158-198)||(11160852-11160892)
[»] chr5 (1 HSPs)
chr5 (150-206)||(8992555-8992611)
[»] chr1 (1 HSPs)
chr1 (150-316)||(45071637-45071811)
[»] chr3 (1 HSPs)
chr3 (150-206)||(50915239-50915295)


Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 67 - 460
Target Start/End: Complemental strand, 37581134 - 37580737
Alignment:
Q  67 taaccacaattattgattcc-atgggttttccccgggacgagctgcctcctcttcattcggctttggactgaagttattctgactgttaaatgtcttgcg 165  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  37581134 taaccacaattattgattcccatgggttttccccgggacgagctgcctcctcttcgttcggctttggactgaagttattctgactgttaaacgtcttgcg 37581035  T
Q  166 aatctcctccggcgtcttccccttgatcatgtccgccacaggtaagc---aacaggctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaag 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37581034 aatctcctccggcgtcttccccttgatcatgtccgccacaggtaagcttcaacaggctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaag 37580935  T
Q  263 catagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatccaaactcaccgcagcgtcccagcctgcttccacattcttctgaacc 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37580934 catagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatccaaactcaccgcagcgtcccagcctgcttccacattcttctgaacc 37580835  T
Q  363 tcaagatcattggaactcgcagactccaaaagcatagcgttatcaaccttaacgaaatcagcatcccaacaattaagatcatcagaactagcctttgc 460  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37580834 tcaagatcattggaactcgcagactccaaaagcatagccttatcaaccttaacgaaatcagcatcccaacaattaagatcatcagaactagcctttgc 37580737  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 152 - 316
Target Start/End: Original strand, 37480685 - 37480857
Alignment:
Q  152 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag--------gtaag---caacaggctcttgatgttcaagtaatttg 240  Q
    ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||        |||||   ||  || |||||||| |||||||||||||    
T  37480685 ttaaaagtctttcgaatttcctccggcgtcttccctttgatcatgtccgccacagtctggcaggtaagatccagtagactcttgatattcaagtaatttg 37480784  T
Q  241 cagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 316  Q
    ||||  |||||||  |||||||| |||||||||||||   ||| | ||||||||| ||||||  ||||||||||||    
T  37480785 cagcaagaatgagaccgaaaagcttagcctgatcaac---ctttacgaattcagcatcccaattcttaagatcatc 37480857  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 316
Target Start/End: Complemental strand, 6778755 - 6778583
Alignment:
Q  152 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag--------gtaag---caacaggctcttgatgttcaagtaatttg 240  Q
    ||||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||        |||||   ||  || |||||||| |||||||||||||    
T  6778755 ttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacagactggcatgtaagatccagtagactcttgatattcaagtaatttg 6778656  T
Q  241 cagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 316  Q
    ||||  ||||||| ||||||||  || ||||||||||   ||||| ||||||||| ||||||  ||||||||||||    
T  6778655 cagcaagaatgagatcgaaaagtgtatcctgatcaac---cttcacgaattcagcatcccaattcttaagatcatc 6778583  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 316
Target Start/End: Complemental strand, 6774468 - 6774296
Alignment:
Q  152 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgcca--------caggtaag---caacaggctcttgatgttcaagtaatttg 240  Q
    ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||        ||||||||   ||| || |||||||| ||||||| |||||    
T  6774468 ttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacatactggcaggtaagatccaatagactcttgatattcaagtcatttg 6774369  T
Q  241 cagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 316  Q
    ||||  ||||||| ||||||||| ||| ||||| |||   |||||  |||||||| ||||||  ||||||||||||    
T  6774368 cagcaagaatgagatcgaaaagcgtagtctgatgaac---cttcacaaattcagcatcccaattcttaagatcatc 6774296  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 37476241 - 37476335
Alignment:
Q  219 ctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 316  Q
    |||||||| |||||||||||||||||  ||||||| ||||||||  || ||||||||||   ||| | ||||||||| ||||||  ||||||||||||    
T  37476241 ctcttgatattcaagtaatttgcagcaagaatgagatcgaaaagtttatcctgatcaac---ctttacgaattcagcatcccaattcttaagatcatc 37476335  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Original strand, 37466497 - 37466526
Alignment:
Q  402 ttatcaaccttaacgaaatcagcatcccaa 431  Q
    ||||||||||||||||||||||||||||||    
T  37466497 ttatcaaccttaacgaaatcagcatcccaa 37466526  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 222 - 316
Target Start/End: Complemental strand, 55118972 - 55118878
Alignment:
Q  222 ttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 316  Q
    ||||||||||||||| |||||||| ||| ||| |||  |||  || |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  55118972 ttgatgttcaagtaaattgcagctagaaggagatcgttaagggtatcctgatcaacctgcttcatgaattcagcgtcccaagccttgagatcatc 55118878  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 52791814 - 52791851
Alignment:
Q  160 cttgcgaatctcctccggcgtcttccccttgatcatgt 197  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  52791814 cttgcaaatctcctccggcgtcttacccttgatcatgt 52791851  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 11160892 - 11160852
Alignment:
Q  158 gtcttgcgaatctcctccggcgtcttccccttgatcatgtc 198  Q
    ||||| |||||||||||||||||| | ||||||||||||||    
T  11160892 gtcttacgaatctcctccggcgtcctacccttgatcatgtc 11160852  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 8992611 - 8992555
Alignment:
Q  150 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 206  Q
    ||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||    
T  8992611 tgttaaaggtcttgcgaatctcctcaggtgtcttccccttgatcatgtctgccacag 8992555  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 316
Target Start/End: Original strand, 45071637 - 45071811
Alignment:
Q  150 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgcca--------caggtaag---caacaggctcttgatgttcaagtaatt 238  Q
    ||||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||        ||||||||   || || || |||||| | |||||| ||    
T  45071637 tgttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacaatctggcaggtaagatccagcaagcccttgatatccaagtagtt 45071736  T
Q  239 tgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 316  Q
    ||||||  ||||||| || |||||| |||||||||||||   ||||| ||||||||| ||||||  ||||||||||||    
T  45071737 tgcagcaagaatgaggtcaaaaagcgtagcctgatcaac---cttcacgaattcagcatcccaattcttaagatcatc 45071811  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 50915295 - 50915239
Alignment:
Q  150 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 206  Q
    ||||||| || || ||||| |||||||| |||||||| || ||||||||||||||||    
T  50915295 tgttaaaagtgtttcgaatttcctccggtgtcttccctttcatcatgtccgccacag 50915239  T

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