View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_high_13 (Length: 424)
Name: NF1499_high_13
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 128 - 406
Target Start/End: Original strand, 33166486 - 33166763
Alignment:
| Q |
128 |
aactctaacatgaaacattcatgtgtatattgagtatagattgaatatgcatctcccatgacatcactataagctaccacnnnnnnncttcttggatagg |
227 |
Q |
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| T |
33166486 |
aactctaacatgaaacattcatgtgtatattgagtatagatt-aatatgcatctcccatgacatcactctaagctaccactttttttcttcttggatagg |
33166584 |
T |
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| Q |
228 |
cttgcttgtagcaccctccaaattttttaattatggaattcaccttcgaccatcgagattttagttgtactgggccctttgcaaagaaatgaccacaatg |
327 |
Q |
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| T |
33166585 |
cttgcttgtagcaccctccaaattttttaattatggaattcaccttcgaccatcgagattttagttgtactggtccctttgcaaggaaataaccacaatg |
33166684 |
T |
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| Q |
328 |
ttcattataaccatctgcaattcttttgccaaaaaacatttgctctttgatttacccccgtacaactgcatccttagaa |
406 |
Q |
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| T |
33166685 |
ttcattataaccatctgcaattcttttgccaaaaaacatttgctctttgatttacccctgtacaactgcatccttagaa |
33166763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 33161417 - 33161524
Alignment:
| Q |
26 |
gaggatgagtatgctccagaagccgaagtctttgttcttttactagctccttcaagtgattggtttgactatttaggttcatcttttaacaatctccacg |
125 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33161417 |
gaggatgggtatgctccagaagccgaagtctttgttcttttactagctccttcaagtgattggtttgactatttaggttcatcttttaacaatctccaca |
33161516 |
T |
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| Q |
126 |
caaactct |
133 |
Q |
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| T |
33161517 |
caaactct |
33161524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 34313286 - 34313183
Alignment:
| Q |
32 |
gagtatgctccagaagccgaagtctttgttcttttactagctccttcaagtgattggtttgactatttaggttcatcttttaacaatctccacgcaaact |
131 |
Q |
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||||||||||| ||||| ||| |||| ||||| |||| || |||||| |||| |||||| |||||||||||||||| ||||||| ||| ||| ||| |
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| T |
34313286 |
gagtatgctcctgaagcagaaatcttggttctcttaccgcctacttcaaatgatgtatttgaccatttaggttcatctttcaacaatcgccatgcatact |
34313187 |
T |
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| Q |
132 |
ctaa |
135 |
Q |
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|||| |
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| T |
34313186 |
ctaa |
34313183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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