View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_high_16 (Length: 411)
Name: NF1499_high_16
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 50686518 - 50686273
Alignment:
| Q |
1 |
atcttaaacggttcaaatatattactcagtaactacgccaatgatgctcaaattatacaagcagattttgtcaaaagcagtgttagaaccgaagattgtc |
100 |
Q |
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| T |
50686518 |
atcttaaacggttcaaatatattactcagtaactacgccaatgatgctcaaattatacaagcagattttgtcaaaagcagtgttagaaccgaagattgtc |
50686419 |
T |
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| Q |
101 |
cttccgatggtcttcctgagttcgctcttgttggtcgttccaatgttgggaaatcatcgcttcttaattctattgttcgccgcaagaaactcgctttaac |
200 |
Q |
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| T |
50686418 |
cttccgatggtcttcctgagttcgctcttgttggtcgttccaatgttgggaaatcatcgcttcttaattctattgttcgccgcaagaaactcgctttaac |
50686319 |
T |
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| Q |
201 |
ttcaaagaaacctggtctcttattattattactcacttttcttcac |
246 |
Q |
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| T |
50686318 |
ttcaaagaaacctggtctcttattattattacacacttttcttcac |
50686273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 50686202 - 50686116
Alignment:
| Q |
312 |
gtttgtagggaagacgcaattgattaatcattttcgagttaatgatagttggtacctggttgatttgcctggatatgggtatgtatg |
398 |
Q |
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| T |
50686202 |
gtttgtagggaagacgcaattgattaatcattttcgagttaatgatagttggtacctggttgatttgcctggatatgggtatgtatg |
50686116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 35405312 - 35405376
Alignment:
| Q |
115 |
cctgagttcgctcttgttggtcgttccaatgttgggaaatcatcgcttcttaattctattgttcg |
179 |
Q |
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| T |
35405312 |
cctgaattcgctgttcttggtcgttctaatgttgggaaatcttctcttattaattcacttgttcg |
35405376 |
T |
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