View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_high_2 (Length: 669)
Name: NF1499_high_2
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 10 - 653
Target Start/End: Complemental strand, 36009415 - 36008776
Alignment:
| Q |
10 |
aagaatattctcggcatatctctctcattgacacctctttaataacatatgttttccactcgttttgttctccttaattaactcgtttaccattgtgttt |
109 |
Q |
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| T |
36009415 |
aagaatattctcggcatatctctctcattgacacctctttaataacatatgttttccactcgtttcgttctccttaattaactcgtttaccatcgtgttt |
36009316 |
T |
|
| Q |
110 |
tgcatccctgtcggtatgacacttgtcgcataggctctcccatcgtgcctaattcagattaattaagaaccaaaaagtaacttaagaatcaaaattgtaa |
209 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36009315 |
tgcatccctgtcgatatgacacttgtcgcataggctctcccatcgtccctaattcagattaattaagaaccaaaaagtaacttaagaatcaaaattgtaa |
36009216 |
T |
|
| Q |
210 |
tttattcaaaatataataagttaaaacaccaaacttcaaagttaatcaacaatgttgtcataactagatcgaattatttggttgaaccgataatcaatta |
309 |
Q |
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| T |
36009215 |
tttattcaaaat---ataagttaaaacaccaaacttcaaagttaatcaacaatgttgtcataactagatcgaattatttggttgaaccgataatcaatta |
36009119 |
T |
|
| Q |
310 |
gtttgtcaatttgttcaaccacaatcaattctcacctctcaatcccttaaaatcggattaaaattattannnnnnnnngttaaaaaagatattaatttca |
409 |
Q |
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| T |
36009118 |
gtttgtcaatttgttcaaccacaatcaattctcacttctcaatcccttaaaatcggattaaaattatt-tatttttttgttaaaaaagatattaatttca |
36009020 |
T |
|
| Q |
410 |
tcaatagtacatccggttcaagtgtcataattgaaagaatcgaagcatgaccacaaatctcactagtttaatctcctgttcgattttcagaatatttaca |
509 |
Q |
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| T |
36009019 |
tcaatagtacatccggttcaagtgtcataattgaaagaatcgaagcatgaccacaaatctcactagtttaatctcctgttcgattttcagaatatttaca |
36008920 |
T |
|
| Q |
510 |
agtaggtgtaaagatcctctgcagctataggaatatcatatttgaagggcaacttttgcggcttcggatggccaccaatgaatgcaacatgaatttgtag |
609 |
Q |
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| T |
36008919 |
agtaggtgtaaagatcctctgcagctataggaatatcatatttgaagggcaacttttgcggcttcggatggccaccaatgaatgcaacatgaatttgtag |
36008820 |
T |
|
| Q |
610 |
aaactaacttattctgtacttttccacgttttgtcattaaagct |
653 |
Q |
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| T |
36008819 |
aaactaacttattctgtacttttccacgttttgtcattaaagct |
36008776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 536 - 652
Target Start/End: Complemental strand, 36011615 - 36011496
Alignment:
| Q |
536 |
ataggaatatcatatttg-aagggcaacttttgcggcttcggatggccaccaat---gaatgcaac--atgaatttgtagaaactaacttattctgtact |
629 |
Q |
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|||||||| ||||||||| || ||||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||||| || ||||| |||||| |
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| T |
36011615 |
ataggaatttcatatttggaatagcaacttttgcggcttcggatggccaccaatgaagaatgaaacatatgaatttggagaaa--aagttatt-tgtact |
36011519 |
T |
|
| Q |
630 |
tttccacgttttgtcattaaagc |
652 |
Q |
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||||||| ||||||||| ||||| |
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| T |
36011518 |
tttccactttttgtcatcaaagc |
36011496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 18055130 - 18055078
Alignment:
| Q |
96 |
ttaccattgtgttttgcatccctgtcggtatgacacttgtcgcataggctctc |
148 |
Q |
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||||||| |||||| |||||| ||||||| |||||||||||||||||||||| |
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| T |
18055130 |
ttaccatcatgtttttcatccccgtcggtacgacacttgtcgcataggctctc |
18055078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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