View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_high_21 (Length: 385)
Name: NF1499_high_21
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_high_21 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 41626635 - 41626249
Alignment:
| Q |
8 |
ccaagaaaatcatagaaggacttttcagcagcctgaagtcttaaacattcctgcaacatgcaaggtttttgctccaagtcatcttcttcatccatgagga |
107 |
Q |
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| T |
41626635 |
ccaagaacatcatagaaggacttttcagcagcctgaagtcttaaacattcctgcaacatgcaaggtttttgctccaagtcatcttcttcatccatgagga |
41626536 |
T |
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| Q |
108 |
tgtcatttatgtatcttaggatgttattggaatatcttgtcggttccaagaattgtccatttgagcttgtgccagaagaagaaggtgaa---------tc |
198 |
Q |
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| T |
41626535 |
tgtcatttatgtatcttaggatgttattggaatatcttgtcggttccaagaattgtccatttgagcttgtgccagaagaagaaggtgaagatggtgaatc |
41626436 |
T |
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| Q |
199 |
ttctaattcaaacccatttgttacttggtttactgagtttggaacactaaaatcttgcagaaaggtgtttggagaaagcatattgaaacaaggctaatat |
298 |
Q |
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| T |
41626435 |
ttctaattcaaacccatttgttacttggtttactgagtttggaacactaaaatcttgcagaaaggtgtttggagaaagcatattgaaacaaggctaatat |
41626336 |
T |
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| Q |
299 |
caaaattgaaacaaaaaactcagactcttacaatatatgttttggaagattgtgtctgagaagccaagaatattcatctgattagga |
385 |
Q |
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| T |
41626335 |
caaaattgaaacaaaaaattcagactcttacaatatatgttttggaagattgtgtctgagaagccaagaatattcatctgattagga |
41626249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 41623674 - 41623288
Alignment:
| Q |
8 |
ccaagaaaatcatagaaggacttttcagcagcctgaagtcttaaacattcctgcaacatgcaaggtttttgctccaagtcatcttcttcatccatgagga |
107 |
Q |
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| T |
41623674 |
ccaagaacatcatagaaggacttttcagcagcctgaagtcttaaacattcctgcaacatgcagggtttttgctccaggtcatcttcttcatccatgagga |
41623575 |
T |
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| Q |
108 |
tgtcatttatgtatcttaggatgttattggaatatcttgtcggttccaagaattgtccatttgagcttgtgccagaagaagaaggtgaa---------tc |
198 |
Q |
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| T |
41623574 |
tgtcatttatgtatcttagaatgttattggaatatcttgtcgtttccaaggattctccatttgagcttgtgccagaagaagaaggtgaagacggtgaatc |
41623475 |
T |
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| Q |
199 |
ttctaattcaaacccatttgttacttggtttactgagtttggaacactaaaatcttgcagaaaggtgtttggagaaagcatattgaaacaaggctaatat |
298 |
Q |
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| T |
41623474 |
ttctaattcaaacccatttgttacttggtttactgagtttggaacactaaaatcttgcagaaaggtgttaggagaaagcatattgaaacaaggctaatat |
41623375 |
T |
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| Q |
299 |
caaaattgaaacaaaaaactcagactcttacaatatatgttttggaagattgtgtctgagaagccaagaatattcatctgattagga |
385 |
Q |
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| T |
41623374 |
caaaattgaaacaaaaaactcagactcttacaatatatgttttggaagattgtgtctcagaagccaaaaatattcatctgattagga |
41623288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 41620325 - 41619979
Alignment:
| Q |
8 |
ccaagaaaatcatagaaggacttttcagcagcctgaagtcttaaacattcctgcaacatgcaaggtttttgctccaagtcatcttcttcatccatgagga |
107 |
Q |
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| T |
41620325 |
ccaagaacatcatagaaggatttttcagcagctttgagtcttaaacattcctgcaacatacaaggttcgcgctccaagtcatattcttcatccatgagga |
41620226 |
T |
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| Q |
108 |
tgtcatttatgtatcttaggatgttattggaatatcttgtcggt---tccaagaattgtccatttgagcttgtgccagaagaag------aaggtgaatc |
198 |
Q |
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| T |
41620225 |
tgtcacttatgtatctgaggaatggattggaatatctatccgctgcatactggggatcttcatctgagcttatgacagaagaaggtgaaaatgatgattc |
41620126 |
T |
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| Q |
199 |
ttctaattcaaacccatttgttacttggtttactgagtttggaacactaaaatcttgcagaaaggtgtttggagaaagcatattgaaacaaggctaatat |
298 |
Q |
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| T |
41620125 |
ttccaactcaaacccatttgttacatggttcaatgagttaggaacactaaaatcttgcagaaaggtgttaggaggaagcatgttgaa-------taaaac |
41620033 |
T |
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| Q |
299 |
caaaattgaaacaaaaaactcagactcttacaa-tatatgttttggaagattgt |
351 |
Q |
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| T |
41620032 |
caaacttgaaccaaaagattcagactcttataattagatgttttggaagattgt |
41619979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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