View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1499_high_26 (Length: 356)

Name: NF1499_high_26
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1499_high_26
NF1499_high_26
[»] chr6 (3 HSPs)
chr6 (148-340)||(29334557-29334761)
chr6 (164-256)||(6740955-6741047)
chr6 (47-83)||(8138457-8138493)
[»] chr5 (1 HSPs)
chr5 (164-268)||(6388997-6389104)
[»] chr4 (4 HSPs)
chr4 (164-257)||(3714649-3714742)
chr4 (45-83)||(9783925-9783963)
chr4 (46-83)||(37735815-37735852)
chr4 (46-83)||(43782303-43782340)
[»] chr3 (2 HSPs)
chr3 (218-263)||(20204356-20204401)
chr3 (46-83)||(21245819-21245856)
[»] scaffold0171 (1 HSPs)
scaffold0171 (170-264)||(14725-14819)
[»] chr7 (2 HSPs)
chr7 (49-83)||(40187637-40187671)
chr7 (209-257)||(2406279-2406327)
[»] chr8 (1 HSPs)
chr8 (164-200)||(11578179-11578215)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 148 - 340
Target Start/End: Original strand, 29334557 - 29334761
Alignment:
Q  148 caaagatttaaacccaaagacaatgagttagaaaaacatgcacttgaccactaagtc----aatacatcacgtctgattatattttcaaagtgaagatat 243  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| |||||||    
T  29334557 caaagatttaaatccaaagacaatgagttaggaaaacatgcacttgaccactaagtcagtcaatacatcacgtctgattatattttcaaagtcaagatat 29334656  T
Q  244 ataatataaaatttagactttgaatgt--------nnnnnnnnnnnggtttcatagccacaccaaaccttacaaaggcaacccctgatcactaatcagtg 335  Q
    |||||||||||||||||||||||||||                   ||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  29334657 ataatataaaatttagactttgaatgtaaaaaaaaaaaaaaaaaaaggtttcatagccacaccaaaccttagaaaggccacccctgatcactaatcagtg 29334756  T
Q  336 agatt 340  Q
    |||||    
T  29334757 agatt 29334761  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 6740955 - 6741047
Alignment:
Q  164 aagacaatgagttagaaaaacatgcacttgaccactaagtcaatacatcacgtctgattatattttcaaagtgaagatatataatataaaatt 256  Q
    ||||| ||||||||| |||||||||||||||||||||   ||||||||||  | | ||||||||| |||| | || |||||| ||||||||||    
T  6740955 aagactatgagttaggaaaacatgcacttgaccactagaccaatacatcatatataattatatttccaaattaaaaatatatgatataaaatt 6741047  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 8138457 - 8138493
Alignment:
Q  47 gaggtttgaaccgcagaccttacatatagtatgcatt 83  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  8138457 gaggtttgaaccccagaccttacatatattatgcatt 8138493  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 6388997 - 6389104
Alignment:
Q  164 aagacaatgagttagaaaaacatgcacttgaccactaagtcaatacatcacgtctgatta---tattttcaaagtgaagatatataatataaaatttaga 260  Q
    ||||||||||||||| ||||||  ||||||||| |||  ||||| |||||  ||||||||   |||||||||| ||||||||||||||||||||||| |     
T  6388997 aagacaatgagttaggaaaacacacacttgacctctagatcaatgcatcatatctgattattatattttcaaattgaagatatataatataaaatttggg 6389096  T
Q  261 ctttgaat 268  Q
    ||||||||    
T  6389097 ctttgaat 6389104  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 3714742 - 3714649
Alignment:
Q  164 aagacaatgagttagaaaaacatgcacttgaccactaagtcaatacatcacgtctgattatattttcaaagtgaagatatataatataaaattt 257  Q
    ||||| ||||||||| |||||||||||||||||| ||   ||||||||||  | | ||||||||| |||| | || |||||| |||||||||||    
T  3714742 aagactatgagttaggaaaacatgcacttgaccattagaccaatacatcatatataattatatttccaaattaaaaatatatgatataaaattt 3714649  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 9783963 - 9783925
Alignment:
Q  45 ccgaggtttgaaccgcagaccttacatatagtatgcatt 83  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  9783963 ccgaggtttgaacctcagaccttacatatattatgcatt 9783925  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 37735852 - 37735815
Alignment:
Q  46 cgaggtttgaaccgcagaccttacatatagtatgcatt 83  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  37735852 cgaggtttgaacctcagaccttacatatattatgcatt 37735815  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 43782303 - 43782340
Alignment:
Q  46 cgaggtttgaaccgcagaccttacatatagtatgcatt 83  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  43782303 cgaggtttgaaccgcagaccttgcatatattatgcatt 43782340  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 20204356 - 20204401
Alignment:
Q  218 tgattatattttcaaagtgaagatatataatataaaatttagactt 263  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||    
T  20204356 tgattatattttcaaatcgaacatatataatataaaatttagactt 20204401  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 21245856 - 21245819
Alignment:
Q  46 cgaggtttgaaccgcagaccttacatatagtatgcatt 83  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  21245856 cgaggtttgaaccccagaccttacatatattatgcatt 21245819  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 264
Target Start/End: Complemental strand, 14819 - 14725
Alignment:
Q  170 atgagttagaaaaacatgcacttgaccactaagtcaatacatcacgtctgattatattttcaaagtgaagatatataatataaaatttagacttt 264  Q
    |||||||||| |||||  |||||||||| |||  |||| ||||| || |||||| | ||  ||| ||||||||||||||||||| |||| |||||    
T  14819 atgagttagagaaacacacacttgaccattaaaccaatgcatcatgtttgattacacttcaaaattgaagatatataatataaactttatacttt 14725  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 40187637 - 40187671
Alignment:
Q  49 ggtttgaaccgcagaccttacatatagtatgcatt 83  Q
    |||||||||||||||||||||||||| ||||||||    
T  40187637 ggtttgaaccgcagaccttacatatattatgcatt 40187671  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 2406279 - 2406327
Alignment:
Q  209 catcacgtctgattatattttcaaagtgaagatatataatataaaattt 257  Q
    |||||| ||| |||||||||||||| |||| ||||||| ||||||||||    
T  2406279 catcacatctaattatattttcaaattgaatatatatagtataaaattt 2406327  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 11578179 - 11578215
Alignment:
Q  164 aagacaatgagttagaaaaacatgcacttgaccacta 200  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  11578179 aagactatgagttaggaaaacatgcacttgaccacta 11578215  T

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