View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_high_28 (Length: 339)
Name: NF1499_high_28
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_high_28 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 148 - 339
Target Start/End: Complemental strand, 31536519 - 31536327
Alignment:
| Q |
148 |
tttttcctttttcataaggtccacaaaataa-taaatatgacgcagcaataaaccaaccatccaattacaccatgcagataagaagcaagatagaccact |
246 |
Q |
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| T |
31536519 |
tttttcctttttcataaggtccacaaaataaataaatatgacgcagcaataaaccaaccatccaattacaccatgcagataagaagcaagatagaccact |
31536420 |
T |
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| Q |
247 |
cccttcttgatcactaaaacacatatataattcatttcccactttgtccctccgacataccttgttcctaaatccaaacaaagccagccacca |
339 |
Q |
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| T |
31536419 |
cccttcttgatcactaaaacacatatataattcatttcccactttgtccctccgacataccttgttcctaaatccaaacaaagccagccacca |
31536327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 31536664 - 31536552
Alignment:
| Q |
2 |
ttttttatcacataagtgtgtgattcaagtaaataatattttgtttcaaagttctaaaatttgtaaaatattataagccaaacaatggttggagcttgga |
101 |
Q |
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| T |
31536664 |
ttttttatcacataagtgtgtgattcaagtaaataatattttgtttcaaagttctaaaatttgtaaaatattataagccaaacaatggttggagcttgga |
31536565 |
T |
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| Q |
102 |
taacaaatataag |
114 |
Q |
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| T |
31536564 |
taacaaatataag |
31536552 |
T |
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