View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_high_31 (Length: 323)
Name: NF1499_high_31
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 33634250 - 33634151
Alignment:
| Q |
8 |
cgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
107 |
Q |
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| T |
33634250 |
cgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
33634151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 33633993 - 33633932
Alignment:
| Q |
262 |
acgtcattctcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttt |
323 |
Q |
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| T |
33633993 |
acgtcgttctcaccgttgccttcaacgctaaactcctcgtaactccgatcacttttcctttt |
33633932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 29191578 - 29191683
Alignment:
| Q |
8 |
cgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagat---------caaactcactgagtgacgagtgggaaatttcg |
98 |
Q |
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| T |
29191578 |
cgagagtaaaaaggaaaggagagaattcaaaaaaatggcgggaacagttgcagtgagatcaacaacaacaaactcactgagtgacgagtgggaaatttcc |
29191677 |
T |
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| Q |
99 |
ttcgca |
104 |
Q |
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|||||| |
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| T |
29191678 |
ttcgca |
29191683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 29191849 - 29191902
Alignment:
| Q |
270 |
ctcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttt |
323 |
Q |
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| T |
29191849 |
ctcaccgttgcattcaacgccaaactccttgtaactccgataacttttcctttt |
29191902 |
T |
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