View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1499_high_40 (Length: 283)

Name: NF1499_high_40
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1499_high_40
NF1499_high_40
[»] chr4 (1 HSPs)
chr4 (17-78)||(15556481-15556542)
[»] chr3 (8 HSPs)
chr3 (21-72)||(46480269-46480320)
chr3 (21-72)||(46491182-46491233)
chr3 (17-68)||(46498420-46498471)
chr3 (18-72)||(46474396-46474450)
chr3 (39-72)||(46506843-46506876)
chr3 (30-66)||(47413797-47413833)
chr3 (23-62)||(46236395-46236434)
chr3 (17-58)||(51944362-51944403)
[»] chr2 (2 HSPs)
chr2 (17-66)||(20168627-20168676)
chr2 (17-66)||(20359608-20359657)


Alignment Details
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 15556481 - 15556542
Alignment:
Q  17 agatttgaccggcacaatcctctttgttggacaggtgctcaatcctcttgctgggtaatcat 78  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  15556481 agatttgaccggcacaatcctctttgttggacaggtgcttaatccttttgctgggtaatcat 15556542  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 46480269 - 46480320
Alignment:
Q  21 ttgaccggcacaatcctctttgttggacaggtgctcaatcctcttgctgggt 72  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  46480269 ttgaccggaacaatcatctttgttggacaggtgctcaatcctcttgctgggt 46480320  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 46491182 - 46491233
Alignment:
Q  21 ttgaccggcacaatcctctttgttggacaggtgctcaatcctcttgctgggt 72  Q
    ||||| || |||||| ||||||||||||||||| ||||||||||||||||||    
T  46491182 ttgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggt 46491233  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 46498420 - 46498471
Alignment:
Q  17 agatttgaccggcacaatcctctttgttggacaggtgctcaatcctcttgct 68  Q
    |||||||||||| || ||| |||||||||| |||||||||||||||||||||    
T  46498420 agatttgaccggaactatcgtctttgttgggcaggtgctcaatcctcttgct 46498471  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 46474396 - 46474450
Alignment:
Q  18 gatttgaccggcacaatcctctttgttggacaggtgctcaatcctcttgctgggt 72  Q
    |||||| |||| |||||| ||||||||||||||||||| |||||||||| |||||    
T  46474396 gatttggccggaacaatcatctttgttggacaggtgcttaatcctcttgatgggt 46474450  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 46506876 - 46506843
Alignment:
Q  39 tttgttggacaggtgctcaatcctcttgctgggt 72  Q
    ||||||||||||||||||||||||||||||||||    
T  46506876 tttgttggacaggtgctcaatcctcttgctgggt 46506843  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 47413833 - 47413797
Alignment:
Q  30 acaatcctctttgttggacaggtgctcaatcctcttg 66  Q
    |||||||||||||||||||| ||||||||||||||||    
T  47413833 acaatcctctttgttggacatgtgctcaatcctcttg 47413797  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 46236434 - 46236395
Alignment:
Q  23 gaccggcacaatcctctttgttggacaggtgctcaatcct 62  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  46236434 gaccggaacaatcctctttgctggacaggtgctcaatcct 46236395  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 51944362 - 51944403
Alignment:
Q  17 agatttgaccggcacaatcctctttgttggacaggtgctcaa 58  Q
    ||||||||| || |||||| ||||||||||||||||||||||    
T  51944362 agatttgactggaacaatcatctttgttggacaggtgctcaa 51944403  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 20168676 - 20168627
Alignment:
Q  17 agatttgaccggcacaatcctctttgttggacaggtgctcaatcctcttg 66  Q
    ||||||||| || |||||||||||||| || || ||||||||||||||||    
T  20168676 agatttgacgggaacaatcctctttgtcgggcaagtgctcaatcctcttg 20168627  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 20359608 - 20359657
Alignment:
Q  17 agatttgaccggcacaatcctctttgttggacaggtgctcaatcctcttg 66  Q
    ||||||||| || |||||||||||||| || || ||||||||||||||||    
T  20359608 agatttgacgggaacaatcctctttgtcgggcaagtgctcaatcctcttg 20359657  T

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