View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1499_high_41 (Length: 282)

Name: NF1499_high_41
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1499_high_41
NF1499_high_41
[»] chr2 (22 HSPs)
chr2 (117-267)||(2295665-2295815)
chr2 (117-267)||(2311477-2311627)
chr2 (5-120)||(2295876-2295994)
chr2 (5-120)||(2311688-2311806)
chr2 (21-88)||(19016030-19016097)
chr2 (12-87)||(28846691-28846766)
chr2 (12-87)||(7799036-7799111)
chr2 (12-58)||(14500306-14500352)
chr2 (5-87)||(42327389-42327471)
chr2 (12-87)||(5147680-5147755)
chr2 (12-87)||(23052524-23052599)
chr2 (12-87)||(37480075-37480150)
chr2 (12-87)||(39714992-39715067)
chr2 (5-87)||(30808641-30808723)
chr2 (12-77)||(21213779-21213844)
chr2 (12-87)||(13803495-13803570)
chr2 (4-87)||(26545840-26545923)
chr2 (7-66)||(32650592-32650651)
chr2 (12-63)||(42860372-42860423)
chr2 (13-87)||(35916086-35916160)
chr2 (12-85)||(12086130-12086203)
chr2 (8-77)||(41202260-41202329)
[»] chr7 (28 HSPs)
chr7 (5-88)||(25590610-25590693)
chr7 (136-196)||(15996520-15996580)
chr7 (8-87)||(30579335-30579414)
chr7 (9-87)||(24513797-24513875)
chr7 (12-84)||(25241999-25242071)
chr7 (12-91)||(20335832-20335911)
chr7 (12-87)||(48771938-48772013)
chr7 (12-87)||(2446308-2446383)
chr7 (12-87)||(26459411-26459486)
chr7 (12-87)||(43215184-43215259)
chr7 (12-66)||(45709709-45709763)
chr7 (12-84)||(11765036-11765108)
chr7 (12-84)||(20952150-20952222)
chr7 (22-82)||(28236592-28236652)
chr7 (12-64)||(49050492-49050544)
chr7 (12-59)||(9871287-9871334)
chr7 (20-63)||(26703149-26703192)
chr7 (12-66)||(7721390-7721444)
chr7 (12-66)||(9608630-9608684)
chr7 (12-66)||(9836202-9836256)
chr7 (12-66)||(33222391-33222445)
chr7 (12-66)||(37085550-37085604)
chr7 (87-120)||(15996656-15996689)
chr7 (20-85)||(21854550-21854615)
chr7 (6-63)||(30217903-30217960)
chr7 (12-89)||(31835190-31835267)
chr7 (21-89)||(23301612-23301680)
chr7 (12-88)||(23735228-23735304)
[»] chr1 (31 HSPs)
chr1 (8-87)||(16893394-16893473)
chr1 (21-87)||(40257399-40257465)
chr1 (12-87)||(51814494-51814569)
chr1 (12-66)||(2799883-2799937)
chr1 (7-64)||(15786316-15786373)
chr1 (12-89)||(19528328-19528405)
chr1 (12-64)||(9879461-9879513)
chr1 (12-66)||(8177183-8177237)
chr1 (12-66)||(10526844-10526898)
chr1 (12-66)||(33700774-33700828)
chr1 (17-87)||(41508831-41508901)
chr1 (23-84)||(26232398-26232459)
chr1 (33-89)||(21694444-21694500)
chr1 (12-87)||(1094525-1094600)
chr1 (12-87)||(2219972-2220047)
chr1 (12-63)||(12587294-12587345)
chr1 (12-83)||(24047103-24047174)
chr1 (7-66)||(31383794-31383853)
chr1 (16-66)||(9643814-9643864)
chr1 (12-66)||(24573432-24573486)
chr1 (21-87)||(30689012-30689078)
chr1 (12-86)||(44126396-44126470)
chr1 (21-87)||(45235389-45235455)
chr1 (12-62)||(50901607-50901657)
chr1 (12-66)||(52336775-52336829)
chr1 (12-49)||(1247151-1247188)
chr1 (14-87)||(9570644-9570716)
chr1 (25-66)||(44046162-44046203)
chr1 (12-88)||(12662281-12662357)
chr1 (6-46)||(16040498-16040538)
chr1 (23-87)||(25297772-25297836)
[»] scaffold0021 (1 HSPs)
scaffold0021 (5-77)||(156983-157053)
[»] scaffold0258 (1 HSPs)
scaffold0258 (12-88)||(15324-15400)
[»] scaffold0118 (2 HSPs)
scaffold0118 (5-87)||(44101-44180)
scaffold0118 (20-87)||(41642-41709)
[»] chr6 (17 HSPs)
chr6 (12-87)||(33549104-33549179)
chr6 (16-91)||(3779335-3779410)
chr6 (12-87)||(30127400-30127475)
chr6 (20-87)||(31623000-31623067)
chr6 (12-87)||(12234508-12234583)
chr6 (12-66)||(28363958-28364012)
chr6 (11-64)||(8639129-8639182)
chr6 (12-65)||(14199948-14200001)
chr6 (7-63)||(3172764-3172820)
chr6 (8-71)||(11423582-11423645)
chr6 (12-87)||(34830294-34830369)
chr6 (21-83)||(6776617-6776679)
chr6 (12-66)||(10338175-10338229)
chr6 (12-66)||(13227159-13227213)
chr6 (12-66)||(24641191-24641245)
chr6 (20-64)||(13661543-13661587)
chr6 (12-64)||(34786455-34786507)
[»] chr3 (34 HSPs)
chr3 (12-87)||(51903879-51903954)
chr3 (12-86)||(47454618-47454692)
chr3 (12-87)||(36720381-36720456)
chr3 (12-61)||(31608525-31608574)
chr3 (12-87)||(21960551-21960626)
chr3 (12-66)||(2667883-2667937)
chr3 (20-77)||(4844520-4844577)
chr3 (20-77)||(4870216-4870273)
chr3 (12-72)||(29563915-29563975)
chr3 (23-87)||(31520617-31520681)
chr3 (12-60)||(44743856-44743904)
chr3 (12-87)||(10499110-10499185)
chr3 (7-66)||(30311327-30311386)
chr3 (12-62)||(10445140-10445190)
chr3 (12-66)||(32651439-32651493)
chr3 (14-87)||(2597223-2597296)
chr3 (12-51)||(3427554-3427593)
chr3 (13-64)||(9557343-9557394)
chr3 (12-63)||(11090166-11090217)
chr3 (20-87)||(16991542-16991609)
chr3 (25-88)||(31788984-31789047)
chr3 (8-87)||(32638945-32639024)
chr3 (12-66)||(4222162-4222216)
chr3 (12-66)||(14339631-14339685)
chr3 (20-66)||(44069779-44069825)
chr3 (20-66)||(46518649-46518695)
chr3 (23-64)||(28531070-28531111)
chr3 (6-83)||(45308897-45308974)
chr3 (7-52)||(52769979-52770024)
chr3 (31-87)||(5499427-5499483)
chr3 (23-87)||(7975418-7975482)
chr3 (12-64)||(43902363-43902415)
chr3 (9-65)||(47279402-47279458)
chr3 (20-84)||(53412948-53413012)
[»] chr4 (30 HSPs)
chr4 (12-88)||(39509069-39509145)
chr4 (12-87)||(31759659-31759734)
chr4 (12-87)||(21660145-21660220)
chr4 (12-87)||(21668909-21668984)
chr4 (8-87)||(46545711-46545790)
chr4 (12-91)||(55427201-55427280)
chr4 (12-66)||(38869789-38869843)
chr4 (21-66)||(17618302-17618347)
chr4 (40-88)||(20608921-20608969)
chr4 (12-84)||(41346964-41347036)
chr4 (12-87)||(12798684-12798759)
chr4 (12-87)||(19238578-19238653)
chr4 (12-87)||(37109352-37109427)
chr4 (12-66)||(30938220-30938274)
chr4 (33-87)||(37443702-37443756)
chr4 (14-87)||(9241028-9241101)
chr4 (12-92)||(783272-783352)
chr4 (23-87)||(8306485-8306549)
chr4 (15-87)||(24827825-24827897)
chr4 (12-63)||(5450117-5450168)
chr4 (12-87)||(28635696-28635771)
chr4 (12-87)||(46295097-46295172)
chr4 (12-87)||(47044717-47044792)
chr4 (12-87)||(51250523-51250598)
chr4 (21-83)||(13901746-13901808)
chr4 (33-87)||(15180741-15180795)
chr4 (12-65)||(7949455-7949508)
chr4 (11-88)||(12821967-12822044)
chr4 (12-84)||(7292799-7292871)
chr4 (20-88)||(51948479-51948547)
[»] chr8 (29 HSPs)
chr8 (8-75)||(30774733-30774800)
chr8 (12-87)||(35641902-35641977)
chr8 (12-87)||(968362-968437)
chr8 (8-71)||(5044120-5044183)
chr8 (6-65)||(11492068-11492127)
chr8 (12-87)||(16852340-16852415)
chr8 (12-66)||(7140730-7140784)
chr8 (8-66)||(12281515-12281573)
chr8 (12-84)||(36205198-36205270)
chr8 (12-83)||(4435979-4436050)
chr8 (12-87)||(18540298-18540373)
chr8 (12-87)||(28783060-28783135)
chr8 (12-66)||(29858050-29858104)
chr8 (12-87)||(6436556-6436631)
chr8 (12-87)||(19703488-19703563)
chr8 (12-63)||(31087259-31087310)
chr8 (20-66)||(2203513-2203559)
chr8 (12-66)||(3624601-3624655)
chr8 (7-89)||(29431009-29431091)
chr8 (12-66)||(35690065-35690119)
chr8 (20-77)||(10287485-10287542)
chr8 (20-89)||(26688863-26688932)
chr8 (16-77)||(28636348-28636409)
chr8 (16-77)||(28644082-28644143)
chr8 (16-77)||(28653034-28653095)
chr8 (31-87)||(6569791-6569847)
chr8 (33-85)||(7286209-7286261)
chr8 (8-52)||(24675509-24675553)
chr8 (21-81)||(35035293-35035353)
[»] chr5 (19 HSPs)
chr5 (12-87)||(14495806-14495881)
chr5 (12-87)||(16773807-16773882)
chr5 (12-66)||(43442217-43442271)
chr5 (12-87)||(30109309-30109384)
chr5 (12-87)||(36958123-36958198)
chr5 (21-87)||(8278285-8278351)
chr5 (21-87)||(16457810-16457876)
chr5 (12-66)||(22020863-22020917)
chr5 (12-66)||(27596348-27596402)
chr5 (12-66)||(29075802-29075856)
chr5 (21-87)||(30883208-30883274)
chr5 (20-77)||(1410668-1410725)
chr5 (8-85)||(18595998-18596075)
chr5 (12-87)||(21589288-21589363)
chr5 (20-87)||(29692395-29692462)
chr5 (12-87)||(34984806-34984881)
chr5 (12-60)||(84851-84899)
chr5 (20-64)||(4793097-4793141)
chr5 (8-88)||(21549134-21549214)
[»] scaffold0299 (1 HSPs)
scaffold0299 (12-66)||(11549-11603)
[»] scaffold0194 (1 HSPs)
scaffold0194 (12-66)||(13047-13101)
[»] scaffold1367 (1 HSPs)
scaffold1367 (12-66)||(841-895)
[»] scaffold0291 (1 HSPs)
scaffold0291 (12-87)||(2471-2546)
[»] scaffold0126 (1 HSPs)
scaffold0126 (12-66)||(25348-25402)
[»] scaffold0009 (1 HSPs)
scaffold0009 (12-66)||(19848-19902)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 117 - 267
Target Start/End: Complemental strand, 2295815 - 2295665
Alignment:
Q  117 agagaaatataatcctaattaagctcagttacttgcgcagcaagcaatagctaactaagtgatattgctatcaggtaataattttctctctgttttctag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2295815 agagaaatataatcctaattaagctcagttacttgcgcagcaagcaatagctaactaagtgatattgctatcaggtaataattttctctctgttttctag 2295716  T
Q  217 tatgatttccaatggaaatggaaatttttcatgacattcatttgaaaaatg 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2295715 tatgatttccaatggaaatggaaattttccatgacattcatttgaaaaatg 2295665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 117 - 267
Target Start/End: Complemental strand, 2311627 - 2311477
Alignment:
Q  117 agagaaatataatcctaattaagctcagttacttgcgcagcaagcaatagctaactaagtgatattgctatcaggtaataattttctctctgttttctag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311627 agagaaatataatcctaattaagctcagttacttgcgcagcaagcaatagctaactaagtgatattgctatcaggtaataattttctctctgttttctag 2311528  T
Q  217 tatgatttccaatggaaatggaaatttttcatgacattcatttgaaaaatg 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2311527 tatgatttccaatggaaatggaaattttccatgacattcatttgaaaaatg 2311477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 2295994 - 2295876
Alignment:
Q  5 cgaagaaaatcgaatctgagacctcgaggaggag---tacactcccagatctcaagccaataccaacagatcaacctaagtgggttgaatagaatgaatt 101  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2295994 cgaagaaaatcgaatctgagacctcgaggaggaggagtacactcccagatctcaagccaataccaacaaatcaacctaagtgggttgaatagaatgaatt 2295895  T
Q  102 gttattgatcaaatgagag 120  Q
    |||||||||||||||||||    
T  2295894 gttattgatcaaatgagag 2295876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 2311806 - 2311688
Alignment:
Q  5 cgaagaaaatcgaatctgagacctcgaggaggag---tacactcccagatctcaagccaataccaacagatcaacctaagtgggttgaatagaatgaatt 101  Q
    |||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  2311806 cgaagaaaatcgaacctgagacctcgaggaggaggagtacactcccagatctcaagccaataccaacaagtcaacctaagtggattgaatagaatgaatt 2311707  T
Q  102 gttattgatcaaatgagag 120  Q
    |||||||||||||||||||    
T  2311706 gttattgatcaaatgagag 2311688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 19016097 - 19016030
Alignment:
Q  21 tgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttg 88  Q
    |||||||||||||||||| |||||||||  |||||||||||||||| |||| ||||| ||||||||||    
T  19016097 tgagacctcgaggaggagcacactcccaagtctcaagccaataccatcagaccaacccaagtgggttg 19016030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 28846766 - 28846691
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||| ||||||||||| |||||||||| || |||| ||||||||  |||||||||||||||||||    
T  28846766 aatcgaacctgagacatcgaggaggagcacactcccaggtcccaagtcaataccactagatcaacctaagtgggtt 28846691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 7799036 - 7799111
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||||||||| |||||||||||| |||||||||  || ||||||||||||| |||  ||||| |||||||||    
T  7799036 aatcgaatctgagatctcgaggaggagcacactcccaagtcccaagccaataccaccaggacaacccaagtgggtt 7799111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 14500352 - 14500306
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagc 58  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||    
T  14500352 aatcgaatctgagacctagaggaggagcacactcccagatctcaagc 14500306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 42327389 - 42327471
Alignment:
Q  5 cgaagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||| ||||||| ||||||||| ||||||||| |||||||||| || |||||||||||||  ||  ||||| |||||||||    
T  42327389 cgaagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 5147680 - 5147755
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||| ||||||| ||| ||||| | |||||||||||||||| ||||||||  ||| ||||| |||||||||    
T  5147680 aatcgaatccgagaccttgagaaggagcatactcccagatctcaagtcaataccactagaccaacccaagtgggtt 5147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 23052524 - 23052599
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||| |||||| || |||||||||  || ||||||||||||| |||  |||||||||||||||    
T  23052524 aatcgaacctgagaccttgaggagaagcacactcccaagtcccaagccaataccaccaggccaacctaagtgggtt 23052599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 37480150 - 37480075
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||| ||||||||| |||||| ||| || ||||||||||||| |||  ||||| |||||||||    
T  37480150 aatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 39715067 - 39714992
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||| |||||||| ||   ||||| |||||||||    
T  39715067 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggtt 39714992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 30808641 - 30808723
Alignment:
Q  5 cgaagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||| ||||||| ||||||||| ||||||||| | | || ||| ||||||||||||| || |||| ||||| |||||||||    
T  30808641 cgaagagaatcgaaactgagaccttgaggaggagcatattctcaggtctcaagccaatatcaccagaccaacccaagtgggtt 30808723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 21213844 - 21213779
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacc 77  Q
    ||||||| |||||||||| |||||||  |||||||||| || ||||||||||||| |||| |||||    
T  21213844 aatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaataccaccagaccaacc 21213779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 13803570 - 13803495
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||| ||||||||| ||||||| |  ||||||||||||| ||  ||||||||| || ||||||    
T  13803570 aatcgaacctgagaccttgaggaggagcacactcctaagtctcaagccaatatcactagatcaacccaaatgggtt 13803495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 26545923 - 26545840
Alignment:
Q  4 tcgaagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| |||| ||  |||||||||||| ||||| ||||| ||||||| ||||| ||||||| || | ||||| |||||||||    
T  26545923 tcgaagagaatcaaacttgagacctcgagaaggagcacacttccagatcccaagctaataccaccaaaccaacccaagtgggtt 26545840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 32650592 - 32650651
Alignment:
Q  7 aagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||| ||||||| | ||||||| ||| |||||||||||||||||||||||| || |||||    
T  32650592 aagagaatcgaacccgagaccttgagcaggagtacactcccagatctcaagtcagtacca 32650651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 42860423 - 42860372
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaata 63  Q
    |||||||  |||||||||||||||||| |||||||||| ||||||| |||||    
T  42860423 aatcgaacttgagacctcgaggaggagcacactcccaggtctcaagtcaata 42860372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 35916160 - 35916086
Alignment:
Q  13 atcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||||||| || ||||||||  ||||||  | |||||||| |||||||| |||| ||||| |||||||||    
T  35916160 atcgaatctgagatcttgaggaggaacacactcttaaatctcaagtcaataccaccagaccaacccaagtgggtt 35916086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 12086130 - 12086203
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtggg 85  Q
    ||||||| | ||||||| ||||||||| ||||| |||| || ||||||||||||| |||  |||| ||||||||    
T  12086130 aatcgaacccgagaccttgaggaggagcacacttccaggtcccaagccaataccaccaggccaacttaagtggg 12086203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 41202329 - 41202260
Alignment:
Q  8 agaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacc 77  Q
    ||||||| ||| || |||| ||||||||||| | |||||||||||||| | |||||||| |||| |||||    
T  41202329 agaaaattgaacctaagacttcgaggaggagcatactcccagatctcaggtcaataccaccagaccaacc 41202260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 25590693 - 25590610
Alignment:
Q  5 cgaagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttg 88  Q
    |||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  25590693 cgaagaaaatcgaacccgagacctcgaggaggagcacactcccagatctcaagccaataccaacaggtcaacccaagtgggttg 25590610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 15996580 - 15996520
Alignment:
Q  136 taagctcagttacttgcgcagcaagcaatagctaactaagtgatattgctatcaggtaata 196  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15996580 taagctcagttacttgcgcaacaagcaataactaactaagtgatattgctatcaggtaata 15996520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 30579414 - 30579335
Alignment:
Q  8 agaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||||| ||||||||| ||||||| | |||||||||| |||||||||||||||| |||  ||||| |||||||||    
T  30579414 agaaaatcgaacctgagaccttgaggaggtggacactcccaggtctcaagccaataccaccaggccaacccaagtgggtt 30579335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 24513875 - 24513797
Alignment:
Q  9 gaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||  ||  ||||| |||||||||    
T  24513875 gaaaatcgaacctgagacctcaaggagaagtacactcccaaatctcaagccaataccactaggccaacccaagtgggtt 24513797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 25242071 - 25241999
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgg 84  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||  | ||||| |||||||||| ||||||    
T  25242071 aatcgaatctgagacctcgaggaggagcatactctcagatctcaagatattaccaccagatcaacccaagtgg 25241999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 20335832 - 20335911
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttgaat 91  Q
    ||||||| ||||||||||||||||||| |||||||||  || ||||||||||||   ||| ||||| |||||||||||||    
T  20335832 aatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacctctagaccaacccaagtgggttgaat 20335911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 48772013 - 48771938
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||| ||   ||||| |||||||||    
T  48772013 aatcgaacctgagacctcaaggaggagcacactcccagatcccaagccaataccaccaagccaacccaagtgggtt 48771938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 2446383 - 2446308
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||  ||||| |||||||||||| |||||||||  || ||||||||||||| |||| ||||| |||||||||    
T  2446383 aatcgaacttgagatctcgaggaggagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggtt 2446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 26459411 - 26459486
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||| ||||||||| |||||||||| || |||||||||||||  ||  ||||| |||||||||    
T  26459411 aatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 43215259 - 43215184
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||| ||||||||| ||||||| || || |||||||||||||  ||| ||||| |||||||||    
T  43215259 aatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggtt 43215184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 45709709 - 45709763
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||||||||||||| |||||| |||||| ||||| |||||||    
T  45709709 aatcgaacctgagacctcgaggaggagcacactctcagatcccaagctaatacca 45709763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 11765036 - 11765108
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgg 84  Q
    |||||||||||||| ||| |||||||| |||||||||  ||  ||| |||||||| || ||||||||||||||    
T  11765036 aatcgaatctgagatctcaaggaggagcacactcccacgtccaaagtcaataccaccaaatcaacctaagtgg 11765108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 20952150 - 20952222
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgg 84  Q
    ||||||||||||||  | ||||||||| |||||||||| || ||| ||||||||| ||| |||||| ||||||    
T  20952150 aatcgaatctgagattttgaggaggagcacactcccaggtcccaaaccaataccatcaggtcaacccaagtgg 20952222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 28236592 - 28236652
Alignment:
Q  22 gagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagt 82  Q
    |||||||||||||||||  ||||||||| || ||||||||||||| || ||||||| ||||    
T  28236592 gagacctcgaggaggagcgcactcccaggtcccaagccaataccatcaaatcaacccaagt 28236652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 49050492 - 49050544
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatac 64  Q
    ||||||| |||||||||| ||||||||||||||| |||||| ||||| |||||    
T  49050492 aatcgaacctgagacctcaaggaggagtacactcgcagatcccaagctaatac 49050544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 9871287 - 9871334
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagcc 59  Q
    ||||||||||||||| ||||||||||| ||||||||| ||| ||||||    
T  9871287 aatcgaatctgagacttcgaggaggagcacactcccaaatcccaagcc 9871334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 26703192 - 26703149
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaata 63  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||||    
T  26703192 ctgagacctcgagaaggagcacactcccagatcccaagccaata 26703149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 7721444 - 7721390
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||||||  |||||||| |||||||||||||||||||| || ||| |||||||||    
T  7721444 aatcgaacatgagaccttgaggaggagtacactcccaggtcccaaaccaatacca 7721390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 9608630 - 9608684
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| |||||| || ||||||||| ||||||||||||| |||||| ||||||    
T  9608630 aatcgaacctgagatcttgaggaggaggacactcccagatcccaagcctatacca 9608684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 9836202 - 9836256
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| |||||| || ||||||||| ||||||||||||| |||||| ||||||    
T  9836202 aatcgaacctgagatcttgaggaggaggacactcccagatcccaagcctatacca 9836256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 33222445 - 33222391
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||| ||||| ||||||||| |||| || |||||||||||||    
T  33222445 aatcgaacctgagaccttgaggatgagtacacttccaggtcccaagccaatacca 33222391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 37085550 - 37085604
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| |||| |||||||||| ||| ||||||||| ||| |||||||||||||    
T  37085550 aatcgaacctgaaacctcgaggatgagcacactcccaaatcccaagccaatacca 37085604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 15996689 - 15996656
Alignment:
Q  87 tgaatagaatgaattgttattgatcaaatgagag 120  Q
    ||||||||||||||||||||| ||||||||||||    
T  15996689 tgaatagaatgaattgttattaatcaaatgagag 15996656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 21854615 - 21854550
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtggg 85  Q
    ||||||| | ||||||||| ||||||||||||| | ||||||||||| |||  ||||| |||||||    
T  21854615 ctgagactttgaggaggagcacactcccagatccctagccaataccatcaggccaacccaagtggg 21854550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 30217960 - 30217903
Alignment:
Q  6 gaagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaata 63  Q
    ||||| |||||||  |||||||| ||||||||| ||||| |||||| |||||||||||    
T  30217960 gaagagaatcgaacttgagaccttgaggaggagcacacttccagatatcaagccaata 30217903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 31835267 - 31835190
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttga 89  Q
    ||||||| ||||||||| ||||||||| ||||||| ||  | |||||||| |||| |||  ||||| |||||||||||    
T  31835267 aatcgaacctgagaccttgaggaggagcacactccaagcacccaagccaacaccaccaggccaacccaagtgggttga 31835190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 23301612 - 23301680
Alignment:
Q  21 tgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttga 89  Q
    ||||||||| |||||||| |||||||||  || |||| |||||||| |||  ||||| |||||||||||    
T  23301612 tgagacctcaaggaggagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgggttga 23301680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 23735228 - 23735304
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttg 88  Q
    |||||||| |||||| | ||||||||| ||| ||||| ||   ||||||||||||  ||||||||| ||||||||||    
T  23735228 aatcgaatatgagactttgaggaggagcacaatcccaaattctaagccaataccactagatcaacccaagtgggttg 23735304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 16893473 - 16893394
Alignment:
Q  8 agaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  16893473 agaaaatcgaacctgagacctcgaggaggagtacactcccaaatctcaagccaataccaacaggtcaacccaagtgggtt 16893394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 40257465 - 40257399
Alignment:
Q  21 tgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| |||  ||||| |||||||||    
T  40257465 tgagacctcgaggaggagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggtt 40257399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 51814569 - 51814494
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||| ||||||||| |||||| ||||||||||| |||||||| |||  ||||| |||||||||    
T  51814569 aatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggtt 51814494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 2799937 - 2799883
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||||||| ||||||    
T  2799937 aatcgaacctgagaccttgaggaggagcacactcccagatctcaagcctatacca 2799883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 15786316 - 15786373
Alignment:
Q  7 aagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatac 64  Q
    |||| ||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||    
T  15786316 aagagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatac 15786373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 19528328 - 19528405
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttga 89  Q
    ||||||| ||||||||| ||||||||| ||||||  ||||| ||||||||||||| |||  ||||| |||||||||||    
T  19528328 aatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggttga 19528405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 9879513 - 9879461
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatac 64  Q
    |||||||||||||||||| |||| |||||||||| |||||| |||||||||||    
T  9879513 aatcgaatctgagacctcaaggaagagtacactctcagatcccaagccaatac 9879461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 8177183 - 8177237
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| |||| |||| ||||||||| ||||||||||||| |||||||||||||    
T  8177183 aatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaatacca 8177237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 10526898 - 10526844
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||||||||||||| ||||||||| | |||||||| || |||||||||||||    
T  10526898 aatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagccaatacca 10526844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 33700774 - 33700828
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||| ||||||||| ||||||||||||  |||||||||||||    
T  33700774 aatcgaacctgagaccttgaggaggagcacactcccagattccaagccaatacca 33700828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 41508901 - 41508831
Alignment:
Q  17 aatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||||||| ||||||||| ||||||||||||| ||| ||| ||||| |||  ||||| |||||||||    
T  41508901 aatctgagaccttgaggaggagcacactcccagatcccaaaccagtaccaccaggccaacccaagtgggtt 41508831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 26232398 - 26232459
Alignment:
Q  23 agacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgg 84  Q
    ||||||| || ||||| |||||||||||||||||||||||||||  ||| ||||| ||||||    
T  26232398 agacctcaagcaggagcacactcccagatctcaagccaataccactagaccaacccaagtgg 26232459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 21694500 - 21694444
Alignment:
Q  33 gaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttga 89  Q
    |||||| |||||||||  |||||||||||||||| ||| |||||| |||||||||||    
T  21694500 gaggagcacactcccaagtctcaagccaataccaccaggtcaacccaagtgggttga 21694444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 1094600 - 1094525
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||| |||||||||| ||||||| |||||| ||| |  |||| ||||||||||| | ||||| |||||||||    
T  1094600 aatcgaatttgagacctcgtggaggagcacactcacaggttccaagtcaataccaacaaaccaacccaagtgggtt 1094525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 2220047 - 2219972
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| |||||||||||||||| || |||||  ||| |  ||||||||||||| |||| ||||| |||||||||    
T  2220047 aatcgaacctgagacctcgaggagaagcacactttcaggttccaagccaataccaccagaacaacccaagtgggtt 2219972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 12587345 - 12587294
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaata 63  Q
    ||||||| ||||||||||||||||||| |||||| |||||| |||| |||||    
T  12587345 aatcgaacctgagacctcgaggaggagcacactcacagatcccaagtcaata 12587294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 24047103 - 24047174
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtg 83  Q
    |||||||  ||| |||||||||||||| |||||||||  ||||||||||||||||  ||| ||||| |||||    
T  24047103 aatcgaacttgaaacctcgaggaggagcacactcccaagtctcaagccaataccatgagaccaacccaagtg 24047174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 31383794 - 31383853
Alignment:
Q  7 aagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||| ||||||| |||||||| | |||||||| |||||||||| || |||||||||||||    
T  31383794 aagagaatcgaacctgagaccccaaggaggagcacactcccaggtcccaagccaatacca 31383853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 9643814 - 9643864
Alignment:
Q  16 gaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||||||||| ||||| ||  ||||||||||||| |||||||||||||    
T  9643814 gaatctgagaccttgaggatgaacacactcccagatcccaagccaatacca 9643864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 24573432 - 24573486
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||||||||||||| ||  ||||| ||| || ||||||||||||||||||||    
T  24573432 aatcgaatctgagaccttgaaaaggagcacattctcagatctcaagccaatacca 24573486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 30689078 - 30689012
Alignment:
Q  21 tgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||| |||||||| | |||||||| ||  |||||||||||| |||  |||||||||||||||    
T  30689078 tgagacctcaaggaggagcaaactcccaggtcctaagccaataccatcagggcaacctaagtgggtt 30689012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 44126470 - 44126396
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggt 86  Q
    |||| |||||||||||||| ||||||| |||||||||| || || | |||||||| |||  ||||| ||||||||    
T  44126470 aatcaaatctgagacctcgtggaggagcacactcccaggtcccaggtcaataccaccaggccaacccaagtgggt 44126396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 45235389 - 45235455
Alignment:
Q  21 tgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||| |||||||||||| |||||||||  || ||| ||||||||| |||| ||||| |||||||||    
T  45235389 tgagatctcgaggaggagcacactcccaagtcccaaaccaataccatcagaccaacccaagtgggtt 45235455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 50901657 - 50901607
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaat 62  Q
    |||||||| |||||||||||||||||| ||||| |||| || |||||||||    
T  50901657 aatcgaatttgagacctcgaggaggagcacactaccaggtcccaagccaat 50901607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 52336775 - 52336829
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| |||||| ||  |||||||| ||||||||||||| |||||||||||||    
T  52336775 aatcgaacctgagatcttaaggaggagcacactcccagatcccaagccaatacca 52336829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 1247188 - 1247151
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccag 49  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  1247188 aatcgaacctgagaccttgaggaggagtacactcccag 1247151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 9570716 - 9570644
Alignment:
Q  14 tcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||||||||| ||||| ||| ||||||| || ||||||||||| |||| |||  ||||| |||||||||    
T  9570716 tcgaatctgagaccttgaggaagagcacactccaaggtctcaagccaacaccatcag-ccaacccaagtgggtt 9570644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 44046162 - 44046203
Alignment:
Q  25 acctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||| ||||||||| ||||||||||||| |||||||||||||    
T  44046162 accttgaggaggagcacactcccagatcccaagccaatacca 44046203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 12662357 - 12662281
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttg 88  Q
    ||||||| ||||||| ||||||||||| ||||| ||  ||| |||| |||||||| |||| ||||| |||| |||||    
T  12662357 aatcgaacctgagacatcgaggaggagcacacttccgtatcacaagtcaataccatcagaccaacccaagtaggttg 12662281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 16040498 - 16040538
Alignment:
Q  6 gaagaaaatcgaatctgagacctcgaggaggagtacactcc 46  Q
    ||||| |||||||||||||| |||||| |||||||||||||    
T  16040498 gaagataatcgaatctgagatctcgagaaggagtacactcc 16040538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 25297836 - 25297772
Alignment:
Q  23 agacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||||||||||| |||||| ||||||  ||| ||||||||  ||| ||||| |||||||||    
T  25297836 agacctcgaggaggagcacactctcagatcctaagtcaataccactagaccaacccaagtgggtt 25297772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 156983 - 157053
Alignment:
Q  5 cgaagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacc 77  Q
    |||||||||||||| ||||  ||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  156983 cgaagaaaatcgaacctga--cctcgaggaggagcacactcccagatctcaagccaataccaacaggtcaacc 157053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 15324 - 15400
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttg 88  Q
    ||||||| ||||||||||||||||||| |||||||||| || ||||||||||||| |||| ||||| ||||||||||    
T  15324 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggttg 15400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 44101 - 44180
Alignment:
Q  5 cgaagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||||||||| ||||| ||||||||| |   ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  44101 cgaagaaaatcgaatatgagatctcgaggagca---cactcccagatctcaagccaatatcaatagatcaacctaagtgggtt 44180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 41642 - 41709
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||  ||  ||||| |||||||||    
T  41642 ctgagacctcgaggaggagcatactctcagatctcaagccaataccactaggccaacccaagtgggtt 41709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 33549179 - 33549104
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||||||||||||| |||||||||| || ||||||||||||| |||| ||||| |||||||||    
T  33549179 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 33549104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 3779410 - 3779335
Alignment:
Q  16 gaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttgaat 91  Q
    ||||||||||||| ||| ||||| |||||||||  ||||||||||||||||  || ||||||||||||||||||||    
T  3779410 gaatctgagaccttgagaaggagcacactcccaagtctcaagccaataccactaggtcaacctaagtgggttgaat 3779335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 30127475 - 30127400
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| |||||||||||| |||||| ||||||||||| | ||||||||||||| |||| ||||| |||||||||    
T  30127475 aatcgaacctgagacctcgaagaggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggtt 30127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 31623000 - 31623067
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||| | || ||||| |||||||||    
T  31623000 ctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccggaccaacccaagtgggtt 31623067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 12234508 - 12234583
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| |||||||||||||  |||| |||||||||| || |||| |||||||| |||  |||||||||||||||    
T  12234508 aatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggccaacctaagtgggtt 12234583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 28364012 - 28363958
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||||||||||||| ||||||||| |||||| |||||| ||| |||||||||    
T  28364012 aatcgaatctgagaccttgaggaggagcacactcgcagatcccaaaccaatacca 28363958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 8639182 - 8639129
Alignment:
Q  11 aaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatac 64  Q
    |||||||| ||||||||| ||||||||| ||| | |||||||||||||||||||    
T  8639182 aaatcgaagctgagaccttgaggaggagcacatttccagatctcaagccaatac 8639129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 14199948 - 14200001
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacc 65  Q
    ||||||||||||||||| ||||||||| |||||||||  ||||||||| |||||    
T  14199948 aatcgaatctgagaccttgaggaggagcacactcccaagtctcaagcctatacc 14200001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 3172764 - 3172820
Alignment:
Q  7 aagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaata 63  Q
    ||||||||||||||||||||||||| |||||| | |||||||| || |||| |||||    
T  3172764 aagaaaatcgaatctgagacctcgatgaggagcatactcccaggtcccaagtcaata 3172820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 11423645 - 11423582
Alignment:
Q  8 agaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacaga 71  Q
    ||||||||||| |||||||||||||||| || | ||||||| ||| |||| |||||||| ||||    
T  11423645 agaaaatcgaacctgagacctcgaggagaagcatactcccaaatcccaagtcaataccaccaga 11423582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 34830294 - 34830369
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||| ||||| || ||| |||||||||||  ||||||||||  |||||||| |||| ||||||||| |||||    
T  34830294 aatcgaatatgagaacttgagcaggagtacactttcagatctcaaatcaataccaccagagcaacctaagggggtt 34830369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 6776617 - 6776679
Alignment:
Q  21 tgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtg 83  Q
    |||||| ||||||||||| |||| |||||||| ||||||||||||| |||  ||||| |||||    
T  6776617 tgagacatcgaggaggagcacacccccagatcccaagccaataccaccaggccaacccaagtg 6776679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 10338175 - 10338229
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||| ||||||||| ||||||| || || |||||||||||||    
T  10338175 aatcgaacctgagaccttgaggaggagcacactcctaggtcccaagccaatacca 10338229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 13227159 - 13227213
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||||||  |||||| ||||||||||| ||||||||||||||||  |||||||||    
T  13227159 aatcgaacttgagacttcgaggaggagcacactcccagatctcataccaatacca 13227213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 24641191 - 24641245
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| || | |||||||||||||| ||||||||||||| |||| ||||||||    
T  24641191 aatcgaaccttaaacctcgaggaggagcacactcccagatcccaagtcaatacca 24641245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 13661587 - 13661543
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaatac 64  Q
    ||||||||||||||||||| |||||||||  | ||||||||||||    
T  13661587 ctgagacctcgaggaggagcacactcccaagtgtcaagccaatac 13661543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 34786455 - 34786507
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatac 64  Q
    |||||||  |||||| ||||| ||||| ||||||||||||| |||||||||||    
T  34786455 aatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 34786507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 51903879 - 51903954
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| |||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||| | |||||||    
T  51903879 aatcgaacctgagaccacgaggaggagcacactcccagatcccaagccaataccaacaggtcaacccaggtgggtt 51903954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 47454618 - 47454692
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggt 86  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||  ||| ||||| ||||||||    
T  47454618 aatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaataccactagaacaacccaagtgggt 47454692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 36720456 - 36720381
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| |||| |||||||||||||| ||||||||| ||| ||||||||||||| |||| ||||| |||||||||    
T  36720456 aatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaataccaccagaccaacccaagtgggtt 36720381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 31608525 - 31608574
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaa 61  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  31608525 aatcaaatctgagacctcgaggaggagcacactcccagatctcaagccaa 31608574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 21960626 - 21960551
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||||||||||||||||||||| |||||| ||| || ||||||||||||| |||  ||||| || ||||||    
T  21960626 aatcgaatctgagacctcgaggaggagcacactctcaggtcccaagccaataccaccagcgcaacccaattgggtt 21960551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 2667937 - 2667883
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  2667937 aatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaatacca 2667883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 4844520 - 4844577
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacc 77  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||||| |||| |||||    
T  4844520 ctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacc 4844577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 4870216 - 4870273
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacc 77  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||||| |||| |||||    
T  4870216 ctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacc 4870273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 29563975 - 29563915
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagat 72  Q
    ||||||| ||||||| |||||||| || ||||| ||||||||||||||||||||| |||||    
T  29563975 aatcgaacctgagacttcgaggagaagcacacttccagatctcaagccaataccaccagat 29563915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 31520617 - 31520681
Alignment:
Q  23 agacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||| |||  ||||| |||||||||    
T  31520617 agacctcgaggaggagcacactcccagatcccaagccaatgccaccaggccaacccaagtgggtt 31520681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 44743856 - 44743904
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagcca 60  Q
    ||||||| ||||||||||||||||||| ||||||||||||| |||||||    
T  44743856 aatcgaacctgagacctcgaggaggagcacactcccagatcccaagcca 44743904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 10499110 - 10499185
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| |||||||||| |||| ||| | ||||||||||| ||||||||||||| |||  ||||| |||||||||    
T  10499110 aatcgaacctgagacctcaaggaagagcagactcccagatcccaagccaataccaccaggccaacccaagtgggtt 10499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 30311386 - 30311327
Alignment:
Q  7 aagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||| ||||||| ||||||||| ||||||||| ||||||||||||| |||||| ||||||    
T  30311386 aagagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagcctatacca 30311327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 10445140 - 10445190
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaat 62  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||||||    
T  10445140 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaat 10445190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 32651439 - 32651493
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||||||||||||| || ||||||||| |||||||||| || |||||||||||||    
T  32651439 aatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaatacca 32651493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 2597223 - 2597296
Alignment:
Q  14 tcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||| |||||||||| |||||||| ||||||| | |||  |||||||||||| |||| ||||| |||||||||    
T  2597223 tcgaacctgagacctcaaggaggagcacactcctaaatccgaagccaataccaccagaccaacccaagtgggtt 2597296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 3427554 - 3427593
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagat 51  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  3427554 aatcgaatctgagaccttgaggaggagcacactcccagat 3427593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 9557394 - 9557343
Alignment:
Q  13 atcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatac 64  Q
    |||||| |||||| |||||||||||| |||||| |||||| |||||||||||    
T  9557394 atcgaacctgagatctcgaggaggagcacactctcagatcccaagccaatac 9557343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 11090166 - 11090217
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaata 63  Q
    ||||||| || |||||||||||||||| ||| ||||||||| ||||||||||    
T  11090166 aatcgaaactaagacctcgaggaggagcacattcccagatcccaagccaata 11090217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 16991609 - 16991542
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||||| | || ||||||||||||||||| ||||||||||||| |||  ||||| || ||||||    
T  16991609 ctgagacctcaaagaagagtacactcccagatcccaagccaataccaccaggccaacccaaatgggtt 16991542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 31788984 - 31789047
Alignment:
Q  25 acctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttg 88  Q
    |||||||||||||| ||||||||||||| |||||||||| ||  ||  ||||| ||||||||||    
T  31788984 acctcgaggaggagcacactcccagatcccaagccaataacactaggccaacccaagtgggttg 31789047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 32639024 - 32638945
Alignment:
Q  8 agaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||||| |||||||||||| || ||  |||||||||| |  ||||||||||||| |||| ||||| || ||||||    
T  32639024 agaaaatcgaacctgagacctcgaagatgaacacactcccagtttccaagccaataccaccagaacaacccaaatgggtt 32638945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 4222216 - 4222162
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| || |||| | ||||||||| ||||||||||||| |||||||||||||    
T  4222216 aatcgaacctaagactttgaggaggagcacactcccagatcccaagccaatacca 4222162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 14339685 - 14339631
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||| | ||||||||| ||||||||| ||| |||||||||||||    
T  14339685 aatcgaacctgagacattgaggaggagcacactcccaaatcccaagccaatacca 14339631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 44069825 - 44069779
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||||| ||||||||| ||||||| |||||||||||||| ||||    
T  44069825 ctgagaccttgaggaggagcacactccaagatctcaagccaacacca 44069779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 46518695 - 46518649
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||| |||| ||||||||| ||||||||||||| |||||||||||||    
T  46518695 ctgaaaccttgaggaggagcacactcccagatcccaagccaatacca 46518649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 28531070 - 28531111
Alignment:
Q  23 agacctcgaggaggagtacactcccagatctcaagccaatac 64  Q
    |||||||||||||||| | ||||||||||| |||||||||||    
T  28531070 agacctcgaggaggagcatactcccagatcccaagccaatac 28531111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 45308897 - 45308974
Alignment:
Q  6 gaagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtg 83  Q
    ||||| ||||||| ||||||||||||||||||| | |||| ||  || ||| ||||||||| |||| ||||| |||||    
T  45308897 gaagataatcgaacctgagacctcgaggaggagcatactcacaagtcccaaaccaataccaccagaacaacccaagtg 45308974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 52769979 - 52770024
Alignment:
Q  7 aagaaaatcgaatctgagacctcgaggaggagtacactcccagatc 52  Q
    |||| ||||||| |||||||||| |||||||| |||||||||||||    
T  52769979 aagagaatcgaacctgagacctcaaggaggagcacactcccagatc 52770024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 5499427 - 5499483
Alignment:
Q  31 aggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||| |||||| ||||||||||| |||||||| |||  ||||| |||||||||    
T  5499427 aggaggagcacactctcagatctcaagtcaataccaccaggccaacccaagtgggtt 5499483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 7975482 - 7975418
Alignment:
Q  23 agacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||| ||||||||| ||||||||||||| |||||| ||||||  ||  |||||||| ||||||    
T  7975482 agaccttgaggaggagcacactcccagatcccaagcctataccactaggccaacctaaatgggtt 7975418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 43902363 - 43902415
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatac 64  Q
    |||||||||||||||||||||||| ||  |||||| || || |||||||||||    
T  43902363 aatcgaatctgagacctcgaggagaagcgcactcctaggtcacaagccaatac 43902415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 47279402 - 47279458
Alignment:
Q  9 gaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacc 65  Q
    ||||||||||  ||||||||  |||||||| ||||||||||||| ||||| ||||||    
T  47279402 gaaaatcgaacatgagaccttaaggaggagcacactcccagatcccaagcaaatacc 47279458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 53413012 - 53412948
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgg 84  Q
    ||||||||| ||||||||| |||||||||| |  |||||||||||||  ||| ||||| ||||||    
T  53413012 ctgagaccttgaggaggagcacactcccaggttacaagccaataccactagaccaacccaagtgg 53412948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 39509145 - 39509069
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttg 88  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||||| |||||  ||| ||||| ||||||||||    
T  39509145 aatcgaacctgagacctcgaggaggagcacactcccagatcccaagccattaccatgagaccaacccaagtgggttg 39509069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 31759659 - 31759734
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||||||||||| ||||||||| |||||||||  || |||||||||||||  ||||||||| |||||||||    
T  31759659 aatcgaatctgagaccttgaggaggagcacactcccaagtcccaagccaataccactagatcaacccaagtgggtt 31759734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 21660145 - 21660220
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||  |||||||||||||| ||| |||||||||||||||||| |||||||| |||| ||||| |||| ||||    
T  21660145 aatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaagttggtt 21660220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 21668909 - 21668984
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||  |||||||||||||| ||| |||||||||||||||||| |||||||| |||| ||||| |||| ||||    
T  21668909 aatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaagttggtt 21668984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 46545790 - 46545711
Alignment:
Q  8 agaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||||||||||||| || ||||||||| |||||| ||| ||||||||||||||||  ||  ||||| |||||||||    
T  46545790 agaaaatcgaatctgagatcttgaggaggagcacactctcaggtctcaagccaataccactaggccaacccaagtgggtt 46545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 55427201 - 55427280
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttgaat 91  Q
    ||||||| ||||||||||||| ||||| | |||||||| || ||||||||||||| |||  ||||| |||||||||||||    
T  55427201 aatcgaacctgagacctcgagcaggagcagactcccaggtcccaagccaataccaccaggccaacccaagtgggttgaat 55427280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 38869843 - 38869789
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  38869843 aatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatacca 38869789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 17618347 - 17618302
Alignment:
Q  21 tgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||    
T  17618347 tgagacctcgaggaggagcacactcccaggtctcaagccaatacca 17618302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 20608969 - 20608921
Alignment:
Q  40 acactcccagatctcaagccaataccaacagatcaacctaagtgggttg 88  Q
    |||||||| |||||||||||||||||| |||||||||| ||||||||||    
T  20608969 acactcccggatctcaagccaataccatcagatcaacccaagtgggttg 20608921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 41346964 - 41347036
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgg 84  Q
    ||||||| ||||||| ||||||||||| | ||||||||||||||| ||||||||| |||  ||||| ||||||    
T  41346964 aatcgaacctgagacttcgaggaggagcatactcccagatctcaaaccaataccatcaggccaacccaagtgg 41347036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 12798759 - 12798684
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| |||| ||||||||||| || ||||||||||||||||| |||||||||   | |||||| |||||||||    
T  12798759 aatcgaacctgaaacctcgaggagcagcacactcccagatctcaaaccaataccactcggtcaacccaagtgggtt 12798684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 19238578 - 19238653
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| | ||||||||||||||||| |||||||||  || ||||||||||||| |||  ||||| |||||||||    
T  19238578 aatcgaacccgagacctcgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaagtgggtt 19238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 37109352 - 37109427
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||| ||||||||| |||||||||| || |||||||||||||  ||  ||||| |||||||||    
T  37109352 aatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 30938220 - 30938274
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||||||||||||| ||||||| ||||| ||| |||||||||    
T  30938220 aatcgaacctgagacctcgaggaggagcacactccaagatcccaaaccaatacca 30938274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 37443756 - 37443702
Alignment:
Q  33 gaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||||||||||||||| |||||||||||||  || |||||| |||||||||    
T  37443756 gaggagtacactcccagatcccaagccaataccactaggtcaacccaagtgggtt 37443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 9241028 - 9241101
Alignment:
Q  14 tcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||| || |||||||||| ||||| ||||| ||||||| ||||||||||||| |||  ||||| |||||||||    
T  9241028 tcgaacctcagacctcgagcaggagcacactaccagatcccaagccaataccaccaggccaacccaagtgggtt 9241101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 783272 - 783352
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttgaata 92  Q
    |||||||||| | || | ||| |||||||| || | | |||||||| |||||||| || ||||||||||||||||||||||    
T  783272 aatcgaatctaaaactttgagaaggagtacgcttctaaatctcaagtcaataccaccatatcaacctaagtgggttgaata 783352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 8306549 - 8306485
Alignment:
Q  23 agacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||| ||||||||||| |||||||||| ||||||||| || |||||||| ||||  |||||||||    
T  8306549 agacttcgaggaggagcacactcccaggtctcaagccgatgccaacagaccaactcaagtgggtt 8306485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 24827897 - 24827825
Alignment:
Q  15 cgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||| |||||||||||||||||||  ||||||||| || |||| |||||||| | || ||||| |||||||||    
T  24827897 cgaacctgagacctcgaggaggagcgcactcccaggtcccaagtcaataccaccggaccaaccaaagtgggtt 24827825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 5450168 - 5450117
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaata 63  Q
    |||||||||||| |||| ||||||||| ||||||||||||  ||||||||||    
T  5450168 aatcgaatctgaaaccttgaggaggagcacactcccagattccaagccaata 5450117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 28635771 - 28635696
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| || ||||||| |||||||| ||||||||||||| |||| || ||||| |||  ||||| |||||||||    
T  28635771 aatcgaacctaagacctccaggaggagcacactcccagatcccaagtcagtaccaccaggacaacccaagtgggtt 28635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 46295172 - 46295097
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||| ||||||||| ||||||| |  || |||||||| || | |||| |||||||||||||||    
T  46295172 aatcgaacctgagaccttgaggaggagcacactccaatgtcccaagccaacactaccagaccaacctaagtgggtt 46295097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 47044792 - 47044717
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||||||||||||| | |||| |||||| |||| |||||||| |||  ||| | |||||||||    
T  47044792 aatcgaacctgagacctcgaggaggagcaaactctcagatcccaagtcaataccaccaggccaatccaagtgggtt 47044717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 51250523 - 51250598
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||  ||||| || |||| |||| ||||||||||||| ||||||||||||| |||  ||||| |||||||||    
T  51250523 aatcgaacttgagatcttgaggcggagcacactcccagatcccaagccaataccaccaggccaacccaagtgggtt 51250598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 13901808 - 13901746
Alignment:
Q  21 tgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtg 83  Q
    ||||||||| |||||||  |||||||||| ||||||||||||||||  ||| ||||| |||||    
T  13901808 tgagacctcaaggaggaacacactcccaggtctcaagccaataccactagaccaacccaagtg 13901746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 15180795 - 15180741
Alignment:
Q  33 gaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||||||||||| || |||||||||||||  ||| ||| |||||||||||    
T  15180795 gaggagtacactcccaggtcccaagccaataccactagaccaatctaagtgggtt 15180741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 7949455 - 7949508
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacc 65  Q
    ||||||| ||||||||| ||||||||| ||||||| || || ||||||||||||    
T  7949455 aatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatacc 7949508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 12822044 - 12821967
Alignment:
Q  11 aaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttg 88  Q
    |||||||||||||||||| ||  ||||| ||||||||||||| |||| ||||| || || | |||||  |||||||||    
T  12822044 aaatcgaatctgagaccttgaacaggagcacactcccagatcccaagtcaatatcaccaaaccaaccctagtgggttg 12821967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 7292799 - 7292871
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgg 84  Q
    ||||||| ||||||| | ||||||||| |||||||||| |  |||||||||||||  ||| ||||| ||||||    
T  7292799 aatcgaacctgagactttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgg 7292871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 51948547 - 51948479
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttg 88  Q
    ||||||||||||||||| | ||||||| ||||| |||| |||||| | |||  ||||| ||||||||||    
T  51948547 ctgagacctcgaggaggggcacactcctagatcccaagtcaatactaccaggacaacccaagtgggttg 51948479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 30774733 - 30774800
Alignment:
Q  8 agaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaa 75  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||| ||| ||||||||| ||||||||    
T  30774733 agaaaatcgaatctgagacctcgaggaggaacacacttccagatcccaaaccaataccaccagatcaa 30774800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 35641902 - 35641977
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||| ||||||||||| ||||||||| |||||||||| |||||| |||| ||||| |||||||||    
T  35641902 aatcgaacctgagacatcgaggaggagcacactcccaaatctcaagccgataccaccagaccaacccaagtgggtt 35641977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 968437 - 968362
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||||||||||||| |||||||||| || ||||||||||||| |||  ||||  |||||||||    
T  968437 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 5044120 - 5044183
Alignment:
Q  8 agaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacaga 71  Q
    |||||||||||| ||||| |||||||||||  |||||||||||||||||| |||||||| ||||    
T  5044120 agaaaatcgaatatgagatctcgaggaggatgacactcccagatctcaaggcaataccatcaga 5044183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 11492068 - 11492127
Alignment:
Q  6 gaagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacc 65  Q
    ||||| ||||||| || |||||||||| ||||| ||||||||||||||||||||||||||    
T  11492068 gaagagaatcgaacctaagacctcgagaaggagcacactcccagatctcaagccaatacc 11492127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 16852415 - 16852340
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||||||||||  ||  ||||| |||||||||    
T  16852415 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 16852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 7140784 - 7140730
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||||||||||||| |||||||||||| |||| |||||||| |||||||||||||    
T  7140784 aatcgaatctgagagctcgaggaggagcacacacccagatcccaagccaatacca 7140730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 12281573 - 12281515
Alignment:
Q  8 agaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||||||||||||||||||||||||| | |||||| ||| || |||||||||||||    
T  12281573 agaaaatcgaatctgagacctcgaggaggggcacactctcaggtcccaagccaatacca 12281515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 36205270 - 36205198
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgg 84  Q
    |||||||  |||||||| ||||||||| ||||||||||||||||| |||||| || |||| ||||| ||||||    
T  36205270 aatcgaacatgagaccttgaggaggagcacactcccagatctcaaaccaataacatcagaccaacccaagtgg 36205198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 4436050 - 4435979
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtg 83  Q
    |||||| |||||||||| ||||||||| || ||||||  |||||||||||||||| ||| |||||| |||||    
T  4436050 aatcgagtctgagaccttgaggaggagcactctcccatgtctcaagccaataccagcaggtcaaccgaagtg 4435979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 18540373 - 18540298
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||| |||||| ||||||||||||| || |||||||||||||  ||  ||||| |||||||||    
T  18540373 aatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 18540298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 28783135 - 28783060
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||  |||||||| ||||||||| |||||||||| |||||||||||||||| ||   ||||| |||||||||    
T  28783135 aatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggtt 28783060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 29858050 - 29858104
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||||||||||||| |||||||| | || |||||||||||||    
T  29858050 aatcgaacctgagacctcgaggaggagcacactccctggtcccaagccaatacca 29858104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 6436556 - 6436631
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||||||||||||| | ||||||| ||||||| |  || ||||||||||||| |||  ||||| |||||||||    
T  6436556 aatcgaatctgagaccttgcggaggagcacactcctaagtcccaagccaataccaccagggcaacccaagtgggtt 6436631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 19703488 - 19703563
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||| ||||||||| |||||| ||| || |||||||||||||  ||  ||||| |||||||||    
T  19703488 aatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggtt 19703563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 31087259 - 31087310
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaata 63  Q
    ||||||| ||||||||||||||||| | | ||||||||||| ||||||||||    
T  31087259 aatcgaacctgagacctcgaggagggggatactcccagatcccaagccaata 31087310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 2203559 - 2203513
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||||| ||||||||| |||||||||| || |||||||||||||    
T  2203559 ctgagaccttgaggaggagcacactcccaggtcccaagccaatacca 2203513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 3624655 - 3624601
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||| || |||||| |||||||||| || |||||||||||||    
T  3624655 aatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaatacca 3624601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 29431091 - 29431009
Alignment:
Q  7 aagaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttga 89  Q
    |||| ||||||| ||||| |||| |||||||| |||||||||  || ||||||||||||  |||  ||||| |||||||||||    
T  29431091 aagagaatcgaacctgaggcctcaaggaggagcacactcccaagtcccaagccaataccgccaggccaacccaagtgggttga 29431009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 35690065 - 35690119
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||| ||||||||| | || |||||||| |||||||||||||    
T  35690065 aatcgaacctgagaccttgaggaggagcaaacacccagatcccaagccaatacca 35690119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 10287542 - 10287485
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacc 77  Q
    |||||||||||||||| || ||||| |||||| |||||||||||| | |||| |||||    
T  10287542 ctgagacctcgaggagaagcacacttccagatttcaagccaatactaccagaccaacc 10287485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 26688932 - 26688863
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttga 89  Q
    ||||||||| ||||||||| ||||||| || || |||||||| |||| |||  ||||| |||||||||||    
T  26688932 ctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggttga 26688863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 28636348 - 28636409
Alignment:
Q  16 gaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacc 77  Q
    |||||||||| || ||||| ||||||||||||||||| |||| |||||| | ||| ||||||    
T  28636348 gaatctgagatcttgaggaagagtacactcccagatcccaagtcaatactatcaggtcaacc 28636409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 28644082 - 28644143
Alignment:
Q  16 gaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacc 77  Q
    |||||||||| || ||||| ||||||||||||||||| |||| |||||| | ||| ||||||    
T  28644082 gaatctgagatcttgaggaagagtacactcccagatcccaagtcaatactatcaggtcaacc 28644143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 28653034 - 28653095
Alignment:
Q  16 gaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacc 77  Q
    |||||||||| || ||||| ||||||||||||||||| |||| |||||| | ||| ||||||    
T  28653034 gaatctgagatcttgaggaagagtacactcccagatcccaagtcaatactatcaggtcaacc 28653095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 6569791 - 6569847
Alignment:
Q  31 aggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||| ||||||||||||| |||||||||| ||  ||  |||||||||||||||    
T  6569791 aggaggagcacactcccagatcccaagccaatatcactaggccaacctaagtgggtt 6569847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 7286261 - 7286209
Alignment:
Q  33 gaggagtacactcccagatctcaagccaataccaacagatcaacctaagtggg 85  Q
    |||||| ||||||||||||| ||| |||||||||  || ||||||||||||||    
T  7286261 gaggagcacactcccagatcccaaaccaataccactaggtcaacctaagtggg 7286209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 24675509 - 24675553
Alignment:
Q  8 agaaaatcgaatctgagacctcgaggaggagtacactcccagatc 52  Q
    ||||||||||||||||||||| ||| ||||| |||||| ||||||    
T  24675509 agaaaatcgaatctgagaccttgagaaggagcacactctcagatc 24675553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 35035353 - 35035293
Alignment:
Q  21 tgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaag 81  Q
    ||||||||| | |||||| |||||   |||||||||||||||||||||||  |||||||||    
T  35035353 tgagacctcaaagaggagcacacttttagatctcaagccaataccaacaggccaacctaag 35035293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 14495806 - 14495881
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||| |||||||||||||||||||||| ||||||||||||| |||| |||||||| |||| ||||| || ||||||    
T  14495806 aatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaatgggtt 14495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 16773882 - 16773807
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||| |||||||| |||| ||||  |||||||||    
T  16773882 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 43442271 - 43442217
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  43442271 aatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaatacca 43442217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 30109309 - 30109384
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| |||||||||| |||||||| |||||||||| || ||||||||||||| ||   ||||| |||||||||    
T  30109309 aatcgaacctgagacctcaaggaggagcacactcccaggtcacaagccaataccaccaagccaacccaagtgggtt 30109384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 36958123 - 36958198
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||| |||| |||||  ||||||||| ||||||||||||| ||| || ||||||| |||||||||    
T  36958123 aatcgaacctgagacttcgatgaggaacacactcccaaatctcaagccaatcccaccatatcaacccaagtgggtt 36958198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 8278285 - 8278351
Alignment:
Q  21 tgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||| |||||||||||| |||||||||  || ||||||||||||| |||| ||||| |||||||||    
T  8278285 tgagatctcgaggaggagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggtt 8278351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 16457876 - 16457810
Alignment:
Q  21 tgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||| ||||||||| ||||||| || || ||||||||||||| |||  |||||||||||||||    
T  16457876 tgagaccttgaggaggagcacactccaaggtcccaagccaataccaccaggccaacctaagtgggtt 16457810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 22020863 - 22020917
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||||||||||| || |||||||| ||||||||||||| ||||| |||||||    
T  22020863 aatcgaatctgagacttcaaggaggagcacactcccagatcccaagctaatacca 22020917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 27596402 - 27596348
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||||||||| |||||||||||||||| |||||| |||||| ||||| |||||||    
T  27596402 aatcgaatctaagacctcgaggaggaggacactctcagatcccaagctaatacca 27596348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 29075856 - 29075802
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||||||  ||||| |||||||||||| ||||||||||||| |||||||||||||    
T  29075856 aatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaatacca 29075802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 30883208 - 30883274
Alignment:
Q  21 tgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    |||||||| ||||||||| |||||||||| || |||||||||||||  ||| ||||| |||||||||    
T  30883208 tgagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggtt 30883274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 1410668 - 1410725
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacc 77  Q
    ||||||||||||||||||| ||||||||| ||| |||| |||||||| |||| |||||    
T  1410668 ctgagacctcgaggaggagcacactcccatatcccaagtcaataccaccagaccaacc 1410725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 18595998 - 18596075
Alignment:
Q  8 agaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtggg 85  Q
    ||||||||||| || |||||| ||||||||| ||| |||||| || |||||||||||||  ||||||| | |||||||    
T  18595998 agaaaatcgaacctaagaccttgaggaggagcacattcccaggtcacaagccaataccactagatcaatccaagtggg 18596075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 21589363 - 21589288
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||| |||||||| || | |||||||| || ||||||||||||| |||  ||||| |||||||||    
T  21589363 aatcgaacctgagacatcgaggagtagcagactcccaggtcccaagccaataccaccaggccaacccaagtgggtt 21589288  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 29692395 - 29692462
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| | ||||||||| ||||||||||||| ||| ||||||||| |||| ||||| || ||||||    
T  29692395 ctgagactttgaggaggagcacactcccagatcccaatccaataccaccagaccaacccaaatgggtt 29692462  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 34984881 - 34984806
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| || |||||| ||||||||| |||||||||| |  |||||||||||||  ||| ||||| |||||||||    
T  34984881 aatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgggtt 34984806  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 84899 - 84851
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagcca 60  Q
    |||||||  |||||||| ||||||||| ||||||||||||| |||||||    
T  84899 aatcgaacttgagaccttgaggaggagcacactcccagatcccaagcca 84851  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 4793097 - 4793141
Alignment:
Q  20 ctgagacctcgaggaggagtacactcccagatctcaagccaatac 64  Q
    ||||||||||||||||||| |||||||||| || ||| |||||||    
T  4793097 ctgagacctcgaggaggagcacactcccaggtcccaaaccaatac 4793141  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 21549134 - 21549214
Alignment:
Q  8 agaaaatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggttg 88  Q
    |||||||||||  |||||| |  |||||||| |||||||||| || |||||||||||||  ||  ||||| ||||||||||    
T  21549134 agaaaatcgaacttgagactttaaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttg 21549214  T

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Target: scaffold0299 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 11603 - 11549
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||    
T  11603 aatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaatacca 11549  T

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Target: scaffold0194 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 13047 - 13101
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  13047 aatcgaacctgagaccttgaggaggagcacactcccagatctcaagccaatacca 13101  T

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Target: scaffold1367 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 841 - 895
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||| ||||||||||| ||| ||||||||| |||||||||||||    
T  841 aatcgaacctgagacttcgaggaggagcacattcccagatcccaagccaatacca 895  T

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Target: scaffold0291 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 2471 - 2546
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaataccaacagatcaacctaagtgggtt 87  Q
    ||||||| ||||||||| ||||||||| |||||||||||||  || ||||||||| | || ||||| || ||||||    
T  2471 aatcgaacctgagaccttgaggaggagcacactcccagatccaaaaccaataccaccggaccaacccaaatgggtt 2546  T

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Target: scaffold0126 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 25348 - 25402
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    ||||||| ||||||||| ||| ||||| |||||||||  ||||||||||||||||    
T  25348 aatcgaacctgagaccttgagaaggagcacactcccaagtctcaagccaatacca 25402  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 19848 - 19902
Alignment:
Q  12 aatcgaatctgagacctcgaggaggagtacactcccagatctcaagccaatacca 66  Q
    |||||||  ||||||||| |||||||| | ||||||||||| |||||||||||||    
T  19848 aatcgaacttgagacctcaaggaggagcagactcccagatcccaagccaatacca 19902  T

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