View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_high_48 (Length: 250)
Name: NF1499_high_48
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_high_48 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 8963707 - 8963468
Alignment:
| Q |
1 |
actaacttcttttttcttcactaggttatgattggacactctatgagtatatttaatgtgccctaaattttagaaacaaggtgtcccttcctctcgttaa |
100 |
Q |
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| T |
8963707 |
actaacctcttttttcttcactaggttatgattggacactttatgagtatatttaatgtgccctaaattttagaaacaag-tgtcccttcctctcgttaa |
8963609 |
T |
|
| Q |
101 |
tttctgaatcttccttccttcaattcttacactgtggttgtcacgctatttttagtacgtacacccgattctgttnnnnnnntattggaagaacgaatga |
200 |
Q |
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| T |
8963608 |
tttctgaatcttccttccttcaattcttacactgtggttgtcacgctattttta----gtacacccgattctgttcaaaaaa-attggaagaacgaatga |
8963514 |
T |
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| Q |
201 |
ataacccct----tttatttatttaataaactaaagcagaataatc |
242 |
Q |
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| T |
8963513 |
ataaccccttttatttatttatttaataaactaaagcaaaataatc |
8963468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 37667520 - 37667471
Alignment:
| Q |
192 |
aacgaatgaataaccccttttatttatttaataaactaaagcagaataat |
241 |
Q |
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| T |
37667520 |
aacgaatggatcacccctttcatttatttaataaactaaaccaaaataat |
37667471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 39218648 - 39218697
Alignment:
| Q |
192 |
aacgaatgaataaccccttttatttatttaataaactaaagcagaataat |
241 |
Q |
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|||||||| || |||||||| ||||||||||||||||||| || |||||| |
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| T |
39218648 |
aacgaatggatcacccctttcatttatttaataaactaaaccaaaataat |
39218697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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