View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_high_54 (Length: 238)
Name: NF1499_high_54
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_high_54 |
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| [»] chr6 (8 HSPs) |
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| [»] scaffold0264 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 22204731 - 22204916
Alignment:
| Q |
50 |
aacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccacttactgctgacaacaacaagaactttgcca |
149 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
22204731 |
aacacagaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccacttactgctgacaacaa---gaaatttgcca |
22204827 |
T |
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| Q |
150 |
caaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtcccctagtgattgcagaacctgt |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
22204828 |
caaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtcacccggtgattgcagaacctgt |
22204916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 20086435 - 20086247
Alignment:
| Q |
50 |
aacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccacttactgctgacaacaacaagaactttgcca |
149 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
20086435 |
aacacagaaagcttcatgcctttattgttttcgacgatggataaaactgcagaggaagcagcaggtccacttactactgacaacaacaagaagtttgcca |
20086336 |
T |
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| Q |
150 |
caaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtcccctagtgattgcagaacctgt |
238 |
Q |
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| T |
20086335 |
caaaagaagcaaggatttctgaatctcagaccctttactgtctagctcagtgcacgccggacttgtcacccggtgattgcagaacctgt |
20086247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 20238358 - 20238161
Alignment:
| Q |
40 |
caacgtatctaacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccacttactgctgacaacaacaag |
139 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| ||| | |
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| T |
20238358 |
caacgtatctaacacaaaaagcttcatgcctatattgttttcgacgatgaataaaactgcagagaaagcagcgggtccacttactggtgacaaggacacg |
20238259 |
T |
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| Q |
140 |
aactttgccacaaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtcccctagtgattgcagaacctg |
237 |
Q |
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|| |||||||| | |||| | |||||||||||||||| || |||||||| ||||||||||||||||| |||||||| | ||||||||||||||| |
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| T |
20238258 |
aagtttgccacgatagaaaaacagatttctgaatctcaaacgctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctg |
20238161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 22132342 - 22132145
Alignment:
| Q |
40 |
caacgtatctaacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccacttactgctgacaacaacaag |
139 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| ||| | |
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| T |
22132342 |
caacgtatctaacacaaaaagcttcatgcctatattgttttcgacgatgaataaaactgcagagaaagcagcgggtccacttactggtgacaaggacacg |
22132243 |
T |
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| Q |
140 |
aactttgccacaaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtcccctagtgattgcagaacctg |
237 |
Q |
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|| |||||||| | |||| | |||||||||||||||| || |||||||| ||||||||||||||||| |||||||| | ||||||||||||||| |
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| T |
22132242 |
aagtttgccacgatagaaaaacagatttctgaatctcaaacgctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctg |
22132145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 24384916 - 24385129
Alignment:
| Q |
25 |
catgttgaacgtaggcaacgtatctaacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccacttact |
124 |
Q |
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||||| ||||| ||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||| |
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| T |
24384916 |
catgtggaacgcaggcaacatatctaacacaaaaagcttcatggctttattattttcgacaatgaatataactgcagaggaagcagtaggtccacttact |
24385015 |
T |
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| Q |
125 |
gctgacaacaacaagaactttgccacaaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtcccctagtg |
224 |
Q |
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||| |||||||||||| ||| |||||| || ||| |||| | | | |||| ||||||| |||||||||||||||| ||||||||||||| || |
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| T |
24385016 |
gcttgcaacaacaagaagttttccacaagtgatgcatctgtttcaaatttttagacgctttactatttagctcagtgcacgccagacttgtcccctaatg |
24385115 |
T |
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| Q |
225 |
attgcagaacctgt |
238 |
Q |
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|||||||||||||| |
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| T |
24385116 |
attgcagaacctgt |
24385129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 69 - 238
Target Start/End: Complemental strand, 20205736 - 20205567
Alignment:
| Q |
69 |
ctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccacttactgctgacaacaacaagaactttgccacaaaagaagca-aagattt |
167 |
Q |
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||||||||||| | || |||||| ||||| ||| ||||||||| ||||||||| || |||||| ||| |||| ||||| || ||||||||| |||||| |
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| T |
20205736 |
ctttattgtttacaaccatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagatt- |
20205638 |
T |
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| Q |
168 |
ctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtcccctagtgattgcagaacctgt |
238 |
Q |
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| ||| ||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||| |
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| T |
20205637 |
cggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaacctgt |
20205567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 21972316 - 21972131
Alignment:
| Q |
50 |
aacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccacttactgctgacaacaacaagaactttgcca |
149 |
Q |
| |
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||||| ||||||||| || ||||||||||||| || |||||| ||||||||| ||||||||| |||| |||| || |||||| |||||| ||||| | |
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| T |
21972316 |
aacacgaaaagcttcgtgtctttattgttttcaaccatgaatcgaactgcagacgaagcagcaagtccgcttagtggtgacaagaacaag---tttgcaa |
21972220 |
T |
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| Q |
150 |
caaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtcccctagtgattgcagaacctgt |
238 |
Q |
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||||||||||| |||| ||| ||||||||||||| | |||||||||||||||| ||| ||||| |||| |||||||||||||||| |
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| T |
21972219 |
caaaagaagcacgagtttcggaaaatcagaccctttacagtctagctcagtgcacgctggatttgtcgcctaatgattgcagaacctgt |
21972131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 69 - 238
Target Start/End: Complemental strand, 22099759 - 22099590
Alignment:
| Q |
69 |
ctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccacttactgctgacaacaacaagaactttgccacaaaagaagca-aagattt |
167 |
Q |
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||||||||||| | || |||||| ||||| ||| ||||||||| ||||||||| || |||||| ||| |||| ||||| || ||||||||| |||||| |
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| T |
22099759 |
ctttattgtttacaaccatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagatt- |
22099661 |
T |
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| Q |
168 |
ctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtcccctagtgattgcagaacctgt |
238 |
Q |
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| ||| ||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||| |
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| T |
22099660 |
cggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaacctgt |
22099590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 16394 - 16196
Alignment:
| Q |
40 |
caacgtatctaacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccacttactgctgacaacaacaag |
139 |
Q |
| |
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|||||| || ||||| |||||||||||||||||||||||||| || | | |||||||||| ||||||||| ||||||||| || |||| || ||| |
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| T |
16394 |
caacgtctcaaacacgaaaagcttcatgcctttattgttttcaacctggtacgaaactgcagatgaagcagcacgtccacttattggagacataaaaaag |
16295 |
T |
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| Q |
140 |
aactttgccacaaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtcccctagtgattgcagaacctgt |
238 |
Q |
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|| ||||| |||||||||||| |||| || ||||||||| ||||| ||||||||||||||||| |||||||| |||| |||||||||||||| |
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| T |
16294 |
aagtttgcaacaaaagaagcacgagtttcgaaaaatcagaccctatactgtctagctcagtgcacgccagacttgtctcctaacaattgcagaacctgt |
16196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 47547 - 47745
Alignment:
| Q |
40 |
caacgtatctaacacaaaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccacttactgctgacaacaacaag |
139 |
Q |
| |
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|||||| || ||||| |||||||||||||||||||||||||| || | | |||||||||| ||||||||| ||||||||| || || | || ||| |
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| T |
47547 |
caacgtctcaaacacgaaaagcttcatgcctttattgttttcaaccgggtacgaaactgcagatgaagcagcacgtccacttattggagatataaaaaag |
47646 |
T |
|
| Q |
140 |
aactttgccacaaaagaagcaaagatttctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtcccctagtgattgcagaacctgt |
238 |
Q |
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|| ||||| |||||||||||| |||| || |||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||| |
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| T |
47647 |
aagtttgcaacaaaagaagcacgagtttcgaaaaaacagaccctttactgtctagctcagtgcacgccagacttgtctcctaacaattgcagaacctgt |
47745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 5203 - 5266
Alignment:
| Q |
175 |
tcagaccctttactgcctagctcagtgcacgccggacttgtcccctagtgattgcagaacctgt |
238 |
Q |
| |
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||||||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
5203 |
tcagaccctgtactgtctagaacagtgcacgccggacttgtcccctaacaattgcagaacctgt |
5266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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