View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_high_56 (Length: 237)
Name: NF1499_high_56
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_high_56 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40941103 - 40941326
Alignment:
| Q |
1 |
tataaatatatgatcatcgtagccattctatcatatagtctttattttactcgttatgcggttaaggtgttcgttcacattctgctttcagctattgcta |
100 |
Q |
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| T |
40941103 |
tataaatatatgatcatcgtagccattctatcatatagtctttattttactcgttatgcggttaaggtgttcgttcacattctgctttcagctattgcta |
40941202 |
T |
|
| Q |
101 |
caatgtttctcatttatggttttgtttggtcaccgagagggatcgacgattcattgcgtgattgtggggataagggttg-tcggaacagagttttgattt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
40941203 |
caatgtttctcatttatggttttgtttggtcaccgagagggatcgacgattcattgcatgattttggggataagggttgttgggaacagagttttgattt |
40941302 |
T |
|
| Q |
200 |
tgaagctcaattcatggttggttg |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
40941303 |
tgaagctcaattcatggttggttg |
40941326 |
T |
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