View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1499_high_58 (Length: 233)

Name: NF1499_high_58
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1499_high_58
NF1499_high_58
[»] chr8 (5 HSPs)
chr8 (25-218)||(2798591-2798784)
chr8 (150-191)||(2846812-2846853)
chr8 (188-218)||(2846883-2846913)
chr8 (73-121)||(2781377-2781425)
chr8 (150-182)||(3161369-3161401)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 2798784 - 2798591
Alignment:
Q  25 tctttctaattatacaaacaccttttatgttgtgtttgcactcatggctcttacatttgtttccaaacatttgccggtttttattctcaatggaatctta 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2798784 tctttctaattatacaaacaccttttatgttgtgtttgcactcatggctcttacatttgtttccaaacatttgccggtttttattctcaatggaatctta 2798685  T
Q  125 aaaattgaataatatcatgtattgcaaataatgtcctagatacattgcgtagtctaaccaaatcaaatttataatgctaacttatttacatttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2798684 aaaattgaataatatcatgtattgcaaataatgtcctagatacattgcgtagtctaaccaaatcaaatttataatgctaacttatttacatttt 2798591  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 2846812 - 2846853
Alignment:
Q  150 aaataatgtcctagatacattgcgtagtctaaccaaatcaaa 191  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  2846812 aaataatgtcctagatacattgcgtagtctaactaaatcaaa 2846853  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 2846883 - 2846913
Alignment:
Q  188 caaatttataatgctaacttatttacatttt 218  Q
    |||||||||||||||||||||||||||||||    
T  2846883 caaatttataatgctaacttatttacatttt 2846913  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 2781377 - 2781425
Alignment:
Q  73 tcttacatttgtttccaaacatttgccggtttttattctcaatggaatc 121  Q
    |||||||||||||||| ||||||||| |||||  ||||| |||||||||    
T  2781377 tcttacatttgtttccgaacatttgcaggtttcaattcttaatggaatc 2781425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 3161401 - 3161369
Alignment:
Q  150 aaataatgtcctagatacattgcgtagtctaac 182  Q
    |||||||| ||||||||||||||||||||||||    
T  3161401 aaataatggcctagatacattgcgtagtctaac 3161369  T

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