View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_high_6 (Length: 522)
Name: NF1499_high_6
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 80 - 318
Target Start/End: Original strand, 7902820 - 7903056
Alignment:
| Q |
80 |
tagcagccctcaggaggtgcaaacaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgctcccacagaaat |
179 |
Q |
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| T |
7902820 |
tagctgccctcaggaggtgcaaccaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgctcccacagaaat |
7902919 |
T |
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| Q |
180 |
accaaagttttctattatttgagtacaggataatggtcatatgtcttgagttctgatttgcatgactttacttatgttgatactggtgtccactttgtac |
279 |
Q |
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| T |
7902920 |
accaaagttttctattatttgagtacaggataatggtcatatgtc-tgagttctgatttgcatgactttacttatgttaatactggcgtgcactttgtac |
7903018 |
T |
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| Q |
280 |
ttatcatttcaaaaactttgatcagacttggttaccaaa |
318 |
Q |
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| T |
7903019 |
ttgtcatttc-gaaactttgatcagacttggttaccaaa |
7903056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 53 - 204
Target Start/End: Original strand, 7913210 - 7913366
Alignment:
| Q |
53 |
ttttctttactagggagtctgatgctctagcagccctcaggaggtgcaaacaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaac |
152 |
Q |
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| T |
7913210 |
ttttctttactagggagtctgatgctctagcagccctcaggaggtgcaaccaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaac |
7913309 |
T |
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| Q |
153 |
tttggttacccctgctc-----ccacagaaataccaaagttttctattatttgagta |
204 |
Q |
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| T |
7913310 |
tttggttacccctgctctgctcctacaaaaatacccaagttttctattatttgagta |
7913366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 313 - 506
Target Start/End: Original strand, 7903860 - 7904057
Alignment:
| Q |
313 |
accaaactcacccctaataccaatgctacgcccaaataatgatcttcatcgaagacatttttccttcaccannnnnnnn----gttttgtaaaatctgct |
408 |
Q |
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| T |
7903860 |
accaaactcacccgtaacaccaatgctacgcccaactaatgatcttcaacgaagatatttttccctcaacattttttttttttgttttgtaaaatctgct |
7903959 |
T |
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| Q |
409 |
atgttttttgtcatttagataatgtgagaaattgaaatctcttgtctgcattttaccgctgttgttctcggaagagggtgagttggaaagttcaaagt |
506 |
Q |
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| T |
7903960 |
atgttttttgccatttagataatgtgagaaattgaaatctcttgtctgcattttaccgctattgttttcggaagagggggagttggaaagttcaaagt |
7904057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 7913384 - 7913498
Alignment:
| Q |
198 |
ttgagtacaggataatggtcatatgtcttgagttctgatttgcatgactttacttatgttgatactggtgtccactttgtacttatcatttcaaaaactt |
297 |
Q |
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| T |
7913384 |
ttgaatacaggataatgatcatatgtcc-gagttctgatttgcatgactttacttatgttaatactggtgtgcactttgtacttgtcatttc-gaaactt |
7913481 |
T |
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| Q |
298 |
tgatcagacttggttac |
314 |
Q |
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| T |
7913482 |
tgatcagacttggttac |
7913498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 7896323 - 7896435
Alignment:
| Q |
56 |
tctttactagggagtctgatgctctagcagccctcaggaggtgcaaacaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaacttt |
155 |
Q |
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| T |
7896323 |
tctttacaaggcagtctgaggctttagccgctctcaagaggtacaacaatatgaagcttgatggaaagacattgcaaattgagcttgttggaacaagttt |
7896422 |
T |
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| Q |
156 |
ggttacccctgct |
168 |
Q |
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| T |
7896423 |
ggttactcctgct |
7896435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 7912959 - 7913013
Alignment:
| Q |
313 |
accaaactcacccctaataccaatgctacgcccaaataatgatcttcatcgaaga |
367 |
Q |
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| T |
7912959 |
accaaactcacccctaacaccaatgctacgcccatataatgatcttcatcgaaga |
7913013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 7896218 - 7896271
Alignment:
| Q |
447 |
ctcttgtctgcattttaccgctgttgttctcggaagagggtgagttggaaagtt |
500 |
Q |
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| T |
7896218 |
ctcttttctgtattttacagctgttgttctcggaagagggtgagttggaaagtt |
7896271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 496
Target Start/End: Original strand, 7913073 - 7913157
Alignment:
| Q |
412 |
ttttttgtcatttagataatgtgagaaattgaaatctcttgtctgcattttaccgctgttgttctcggaagagggtgagttggaa |
496 |
Q |
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| T |
7913073 |
ttttttgtcattcagataatatgagaaactgaaatctcttgtcttccttttacagctgttgttttcgaaaaatgatgagttggaa |
7913157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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