View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1499_low_10 (Length: 489)
Name: NF1499_low_10
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_10 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 489
Target Start/End: Original strand, 10468399 - 10468877
Alignment:
| Q |
11 |
cagagacaaaacatgtacacaaatttaacaagtgaacaaatcatacacacaatcacaatggtccctaaaaagttatcctacttcttcctttttcttcaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
10468399 |
cagagacaaaacatgtacacaaatttaacaagtgaacaaatcatacacacaatcacaatggtccctaaaaagctatcctacttcttcctttttcttgaaa |
10468498 |
T |
|
| Q |
111 |
taaacccattttcaatttctgactaacgtattacaaacccaaaaatataaatttttaactttttgtaaatatccaaattatcattgaaatggtgggtcta |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10468499 |
taaacccattttcaatttctgactaatgtattacaaacccaaaaatataaattttgaactttttgtaaatatccaaattatcattgaaatggtgggtcta |
10468598 |
T |
|
| Q |
211 |
tctactcaatcaaattatggatatacaaaaataattttaaaattgcaaaattataatcaagtttgtcttacaatagctcaataatattaaatagaaatga |
310 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10468599 |
tttactcgatcaaattatggatatacaaaaataattttaaaattgcaaaattataatcaaatttgacttacaatagctcaataatattaaatagaaatga |
10468698 |
T |
|
| Q |
311 |
gattttctttttagaattgactctccaatttcaatggaaacaagactatgctaattcaaagttcgataaaaagataggtaaaatatattcgatgaaaaca |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10468699 |
gattttctttttagaattgactctccaatttcaatggaaacaagactatgctaattcaaagtttgataaaaagataggtaaaatatattcgatgaaaaca |
10468798 |
T |
|
| Q |
411 |
aaaccatgctgaaaagtggtaatacgaggctagcttgattccacaaaataagagagaaccatacaccacctacctgcca |
489 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||| || ||| |||| ||||||||||||||||||| |
|
|
| T |
10468799 |
aaaccatgctgaaaagtgataatgcgaggctagcttgattccacaaattacgagtgaacaatacaccacctacctgcca |
10468877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University