View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_11 (Length: 474)
Name: NF1499_low_11
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 26 - 458
Target Start/End: Original strand, 27189552 - 27189996
Alignment:
| Q |
26 |
agaagaagaaaagggtgacggccagggttaaaccctatggagtatggaccacactaactatatataaccgtctcctacactttcatcaactttctctttt |
125 |
Q |
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| T |
27189552 |
agaagaagaaaggggtgacggctagggttaaaccctatggagtatggaccacactaactatatataaccgtcttctacactttcatcaactttctctttt |
27189651 |
T |
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| Q |
126 |
c------------ttttctcatttcaaatcaaaccaaaacaatgaatccttcgtcaactctcacaccttcttctctcattccattacccttccctttccc |
213 |
Q |
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| T |
27189652 |
cttttctcatttcttttctcatttcaaatcaaaccaaaacaatgaatccttcgtcaactctcacaccttcttctctcattccatcacccttccctttccc |
27189751 |
T |
|
| Q |
214 |
actctcttcatccaccaaacgacactgtttcaaactctcactcccacgctcttcatcatcctcctccgttcctccgcccaaagacctcaccggaatcgaa |
313 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27189752 |
actctcttcatccaccaaacgacaccgtttcaaactcccactccctcgctcatcatcctcctcctccgttcctccgcccaaagacctcaccggaatcgaa |
27189851 |
T |
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| Q |
314 |
aacgtcgttgacaaactatcgccaccactccgtctcgctacatccgccgttgttattgctggcgcagtagccgcgggatttcatctcggctcgaaattcg |
413 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
27189852 |
aacgtcgtcgacaaactatcaccaccactccgtctcgctacatccgccgttgttattgccggcgcagtagccgcgggatttcatctcggctccaaattcg |
27189951 |
T |
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| Q |
414 |
gtggaagtcgaaatgctgctgttggaggagcggttgctttgggtg |
458 |
Q |
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| T |
27189952 |
gtggaagtcgaaatgctgctgttggaggagctgttgctttgggtg |
27189996 |
T |
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