View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_14 (Length: 418)
Name: NF1499_low_14
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 42164176 - 42164566
Alignment:
| Q |
17 |
acaaacaatgttgtcaaactcaatgatctaggtaaaatcattgaacctatgtagaattcagaggctctactcgtaaaattaaaagtgtgagtttacctaa |
116 |
Q |
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| T |
42164176 |
acaaacaatgttgtcaaactcaatgatctaggtaaaatcattgaacctatgtagaattcagagactctactcgtaaaattaaaagtgtgagtttacctaa |
42164275 |
T |
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| Q |
117 |
tgttaaattagcctatgaatgacatatcaagaaaatataacaccattaaataataacttaacatttattaaaacaaaataacttcctattaaagcaaaat |
216 |
Q |
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| T |
42164276 |
tgttaaattagcctatgaatgacatatcaagaaaatataataccattaaataataacttaacatttattaaaacaaaataacttcctattaaagcaaaat |
42164375 |
T |
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| Q |
217 |
gtttttaaatagacaaatattaatcattgaatttgaagaataatatatcaaataagtgattaacacataaataactaattaagctagatatcaaaaaata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42164376 |
gtttttaaatagacaaatattaatcattgaatttgaagaataatatatcaaataagtgattaacacataaataactaattaagctagatatcaaaaaata |
42164475 |
T |
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| Q |
317 |
tcaaattaaaattttattaaataactaagtgagatatcaaatattaatattaacttaaataatcaagtgagatatcaaacaatgtagaatt |
407 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42164476 |
tcaaattaaatttttattaaataactaagtgagatatcaaatattaatattaacttaaataatcaagtgagatatcaaacaatgtagaatt |
42164566 |
T |
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