View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_17 (Length: 410)
Name: NF1499_low_17
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 398
Target Start/End: Complemental strand, 2881762 - 2881377
Alignment:
| Q |
14 |
atatattggtataaggtggcaatttatgactatgtgatttgtgcatgtgtttttt-agtatgtattatttgtactgctttcactaattgaaactaaaagg |
112 |
Q |
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| T |
2881762 |
atatattggtataaggtggcaatttatgactatgtgatttgtgcatgtgtttttttagtatgtattatttgtactgctttcactaattgaaactaaaagg |
2881663 |
T |
|
| Q |
113 |
aaataaatattgataaaaattatatatactttgtgaactcttattcatcacgtgttagaagaatatggctgattattgtatacacattgaaagatgacaa |
212 |
Q |
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| T |
2881662 |
aaataaatattgataaaaattatatatactttgtgaactcttattcatcacatgttagaagaatatggctgattattgtatacacattgaaagctgacaa |
2881563 |
T |
|
| Q |
213 |
gaataatatataaatggcattctgacaaaccactgtttaaatattgttttggtggtaaccaacagttgggctctctattgaaaatttgaaatgattgtat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |
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| T |
2881562 |
gaataatatataaatggcattctgacaaaccactgtttaaatattgttttggtggtaactaacagttggcctctctattgaaaatttgaaatgcttgtat |
2881463 |
T |
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| Q |
313 |
tcatctaaattgttttaaacaactaaccctatctttccatgtggctattaaagaatttgcctctttcttaatattaatattccctt |
398 |
Q |
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| T |
2881462 |
tcatctaaattgttttaaacaaccaaccctatctttccatgtggctattaaagaatttgcctctttcttaatattaatattccctt |
2881377 |
T |
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