View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1499_low_18 (Length: 406)

Name: NF1499_low_18
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1499_low_18
NF1499_low_18
[»] chr8 (8 HSPs)
chr8 (51-395)||(32104952-32105296)
chr8 (4-39)||(40649601-40649636)
chr8 (4-45)||(12171983-12172024)
chr8 (4-45)||(12416411-12416452)
chr8 (53-109)||(32103756-32103810)
chr8 (2-45)||(7612102-7612145)
chr8 (2-45)||(44952762-44952805)
chr8 (4-45)||(12946678-12946719)
[»] chr7 (5 HSPs)
chr7 (4-45)||(2819390-2819431)
chr7 (3-45)||(11778714-11778756)
chr7 (3-45)||(19223582-19223624)
chr7 (4-45)||(12651215-12651256)
chr7 (4-52)||(48591150-48591198)
[»] chr6 (3 HSPs)
chr6 (4-51)||(28982528-28982575)
chr6 (4-52)||(10729708-10729756)
chr6 (7-45)||(5456743-5456781)
[»] chr3 (11 HSPs)
chr3 (4-51)||(15927482-15927529)
chr3 (3-45)||(49875929-49875971)
chr3 (4-45)||(31350499-31350540)
chr3 (7-51)||(31664747-31664791)
chr3 (7-51)||(31930922-31930966)
chr3 (4-51)||(31425667-31425714)
chr3 (4-51)||(50886327-50886374)
chr3 (11-45)||(35987055-35987089)
chr3 (4-50)||(37143238-37143284)
chr3 (3-45)||(47479116-47479158)
chr3 (4-45)||(33976287-33976328)
[»] chr4 (2 HSPs)
chr4 (4-45)||(4272461-4272502)
chr4 (4-45)||(54128183-54128224)
[»] chr1 (3 HSPs)
chr1 (3-44)||(27260603-27260644)
chr1 (4-56)||(38762198-38762250)
chr1 (5-52)||(46859568-46859615)
[»] chr5 (4 HSPs)
chr5 (7-45)||(25603561-25603599)
chr5 (4-45)||(21575638-21575679)
chr5 (4-45)||(26009135-26009176)
chr5 (10-54)||(29499661-29499705)
[»] chr2 (1 HSPs)
chr2 (4-45)||(41317214-41317255)


Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 51 - 395
Target Start/End: Complemental strand, 32105296 - 32104952
Alignment:
Q  51 taaaaataaaggcacagtactagtgacaaaatacttttgaattaatttaatgcatgttttgtatagcggtagatgtatctcattgtgattctaacctttt 150  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32105296 taaaaataaaggcacagtactagtgacaaagtacttttgaattgatttaatgcatgttttgtatagcggtagatgtatctctttgtgattctaacctttt 32105197  T
Q  151 agtttgccgcattgtgagattttggacctttctttcaaatgatccaaacttttagtatcataattacaatttttgttgtgatagaatacaaacagcacaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  32105196 agtttgccgcattgtgagattttggacctttctttcaaatgatccaaacttttagtatcgtaattacaatttttgttgtgatagaatacaaacagcccaa 32105097  T
Q  251 ccttttcttcaaggcctctacgaaaacaaaaaagaatannnnnnnggacaaacacaacaactgaactgtagtaatttgctttggtagctattgtaaatat 350  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32105096 ccttttcttcaaggcctctacgaaaacaaaaaagaatatgtttttggacaaacataacaactgaactgtagtaatttgctttggtagctattgtaaatat 32104997  T
Q  351 aaatatatccttggactattagtttgccatcactcctttcttctt 395  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  32104996 aaatatatccttggactattagtttgccgtcactcctttcttctt 32104952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 40649601 - 40649636
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaa 39  Q
    ||||||||||||||||||||||||||||||||||||    
T  40649601 ttgtcactaaaaattgttgaaaattggttgtcaaaa 40649636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 12172024 - 12171983
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  12172024 ttgtcactaaaatttgtttaaaattggttgtcaaaatatcat 12171983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 12416452 - 12416411
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  12416452 ttgtcactaaaatttgtttaaaattggttgtcaaaatatcat 12416411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 32103810 - 32103756
Alignment:
Q  53 aaaataaaggcacagtactagtgacaaaatacttttgaattaatttaatgcatgttt 109  Q
    |||||||||||| ||||||||  |||||||||||||||||| ||||| |||||||||    
T  32103810 aaaataaaggcatagtactag--acaaaatacttttgaattgatttagtgcatgttt 32103756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 7612145 - 7612102
Alignment:
Q  2 gattgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||    
T  7612145 gattgtccctaaaagttgtttaaaattggttgtcaaaatatcat 7612102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 44952762 - 44952805
Alignment:
Q  2 gattgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    ||||||||||||||||||||  |||||| |||||||||||||||    
T  44952762 gattgtcactaaaaattgttagaaattgattgtcaaaatatcat 44952805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 12946678 - 12946719
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||    
T  12946678 ttgtccctaaaaattattgaaaattggatgtcaaaatatcat 12946719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 2819390 - 2819431
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2819390 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 2819431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 11778714 - 11778756
Alignment:
Q  3 attgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    |||||| |||||| ||||| |||||||||||||||||||||||    
T  11778714 attgtccctaaaagttgtttaaaattggttgtcaaaatatcat 11778756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 19223582 - 19223624
Alignment:
Q  3 attgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    ||||||| |||||||| |||||||||| |||||||||||||||    
T  19223582 attgtcattaaaaattattgaaaattgattgtcaaaatatcat 19223624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 12651256 - 12651215
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    ||||||| |||| |||||| ||||||||||||||||||||||    
T  12651256 ttgtcaccaaaagttgttggaaattggttgtcaaaatatcat 12651215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 48591198 - 48591150
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcatcactcta 52  Q
    |||||||  ||| |||||| |||||||||||||||||||||| ||||||    
T  48591198 ttgtcacccaaagttgttggaaattggttgtcaaaatatcattactcta 48591150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 28982575 - 28982528
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcatcactct 51  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  28982575 ttgtcactaaaagttgttgaaaattggttgtcaaaatatcattactct 28982528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 10729708 - 10729756
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcatcactcta 52  Q
    |||||||||||| |||||| |||||||||||||||||||||| ||||||    
T  10729708 ttgtcactaaaagttgttggaaattggttgtcaaaatatcattactcta 10729756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 5456781 - 5456743
Alignment:
Q  7 tcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  5456781 tcactaaaagttgttggaaattggttgtcaaaatatcat 5456743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 15927529 - 15927482
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcatcactct 51  Q
    ||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  15927529 ttgtcactaaaaattattggaaattggttgtcaaaatatcattactct 15927482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 49875929 - 49875971
Alignment:
Q  3 attgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    ||||||||||||| |||||| ||||||||||||||||||||||    
T  49875929 attgtcactaaaagttgttggaaattggttgtcaaaatatcat 49875971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 31350540 - 31350499
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  31350540 ttgtcactaaaagttgttggaaattggttgtcaaaatatcat 31350499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 31664747 - 31664791
Alignment:
Q  7 tcactaaaaattgttgaaaattggttgtcaaaatatcatcactct 51  Q
    ||||||||| |||||| |||||||||||||||||||||| |||||    
T  31664747 tcactaaaagttgttggaaattggttgtcaaaatatcattactct 31664791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 31930966 - 31930922
Alignment:
Q  7 tcactaaaaattgttgaaaattggttgtcaaaatatcatcactct 51  Q
    ||||||||| |||||| |||||||||||||||||||||| |||||    
T  31930966 tcactaaaatttgttggaaattggttgtcaaaatatcattactct 31930922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 31425667 - 31425714
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcatcactct 51  Q
    |||||| |||||||| ||||||||| |||||||||||||||| |||||    
T  31425667 ttgtcattaaaaattattgaaaattagttgtcaaaatatcattactct 31425714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 50886327 - 50886374
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcatcactct 51  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| |||||    
T  50886327 ttgtcactgaaagttgttgaaaattgattgtcaaaatatcattactct 50886374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 35987055 - 35987089
Alignment:
Q  11 taaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    ||||| |||||||||||||||||||||||||||||    
T  35987055 taaaagttgttgaaaattggttgtcaaaatatcat 35987089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 37143238 - 37143284
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcatcactc 50  Q
    |||||||||||| |||||| ||||| |||||||||||||||| ||||    
T  37143238 ttgtcactaaaagttgttggaaattagttgtcaaaatatcattactc 37143284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 47479116 - 47479158
Alignment:
Q  3 attgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    |||||| |||||||||||| ||||||| |||||||||||||||    
T  47479116 attgtccctaaaaattgtttaaaattgattgtcaaaatatcat 47479158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 33976328 - 33976287
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    |||||||||||||||||||||||||   ||||||||||||||    
T  33976328 ttgtcactaaaaattgttgaaaattaaatgtcaaaatatcat 33976287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 4272502 - 4272461
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  4272502 ttgtcactaaaagttgttggaaattggttgtcaaaatatcat 4272461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 54128183 - 54128224
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  54128183 ttgtcactaaaagttgtttaaaattggttgtcaaaatatcat 54128224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 27260644 - 27260603
Alignment:
Q  3 attgtcactaaaaattgttgaaaattggttgtcaaaatatca 44  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  27260644 attgtctctaaaaattgttgaaaattggatgtcaaaatatca 27260603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 38762250 - 38762198
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcatcactctaaaaa 56  Q
    ||||| |||||| ||||| |||||||||||||||||||||||  |||||||||    
T  38762250 ttgtccctaaaagttgtttaaaattggttgtcaaaatatcattcctctaaaaa 38762198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 46859568 - 46859615
Alignment:
Q  5 tgtcactaaaaattgttgaaaattggttgtcaaaatatcatcactcta 52  Q
    ||||||||||| |||||| |||||||||||| ||||||||| ||||||    
T  46859568 tgtcactaaaagttgttggaaattggttgtctaaatatcattactcta 46859615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 25603599 - 25603561
Alignment:
Q  7 tcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  25603599 tcactaaaaattgttagaaattggttgtcaaaatatcat 25603561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 21575679 - 21575638
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    |||||||||||  ||||| |||||||||||||||||||||||    
T  21575679 ttgtcactaaatgttgtttaaaattggttgtcaaaatatcat 21575638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 26009176 - 26009135
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    |||||||||||| ||||| ||||||| |||||||||||||||    
T  26009176 ttgtcactaaaagttgtttaaaattgattgtcaaaatatcat 26009135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 29499705 - 29499661
Alignment:
Q  10 ctaaaaattgttgaaaattggttgtcaaaatatcatcactctaaa 54  Q
    |||||||||||| |||||||| ||||||||||||||  |||||||    
T  29499705 ctaaaaattgttaaaaattggatgtcaaaatatcattcctctaaa 29499661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 41317255 - 41317214
Alignment:
Q  4 ttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 45  Q
    ||||| ||||||||||||||||||| | ||||||||||||||    
T  41317255 ttgtccctaaaaattgttgaaaatttgatgtcaaaatatcat 41317214  T

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