View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_19 (Length: 402)
Name: NF1499_low_19
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 38447755 - 38448139
Alignment:
| Q |
1 |
ttagtgttgccaatattaataatagttttccgtnnnnnnnttatacgttaaatttacaattactttcgtcaatttcaggggtggcgctggaattttacct |
100 |
Q |
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| T |
38447755 |
ttagtgttgccaatattaataatagttttctgtaaaaaaattatacgttaaatttacaattactttcgtcaatttcaggggtggcgctggaatttcacct |
38447854 |
T |
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| Q |
101 |
atacttttgactatgcaatctgatctgcctccactccctcagaatccaccacctatggagactcaatatcagatgtcaggatcaatttctccatatacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447855 |
atacttttgactatgcaatctgatctgcctccactccctcagaatccaccacctatggagactcaatatcagatgtcaggatcaatttctccatatacag |
38447954 |
T |
|
| Q |
201 |
aagagaattgggaaggtttggatgctagtcgcgtgaattcctcgaagataaattttgttgatgaagaagggaagaagccagtttcttcagagaacgattt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38447955 |
aagagaattgggaaggtttggatgctagtcgcgtgaattcctctaagataaattttgttgatgaagaagggaagaagccagtttcttcggagaacgattt |
38448054 |
T |
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| Q |
301 |
tgaaggaaaccataacaatttaattgctacagatatttggtttaactatgacttatatgaaaaagacattaacaacttacatgac |
385 |
Q |
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| T |
38448055 |
tgaaggaaaccataacgacttaattgctacagatatttggtttaactatgacttatatgaaaaagacattaacaacttacatgac |
38448139 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 53351156 - 53351104
Alignment:
| Q |
145 |
tccaccacctatggagactcaatatcagatgtcaggatcaatttctccatata |
197 |
Q |
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| T |
53351156 |
tccaccacctatggagactcaatatcagatgtcagaatcaagttctccatata |
53351104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 53351070 - 53350984
Alignment:
| Q |
201 |
aagagaattgggaaggtttggatgctagtcgcgtgaattcctcgaagataaattttgttgatgaagaagggaagaagccagtttctt |
287 |
Q |
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| T |
53351070 |
aagagaattgggaaggcttcgatgctagtcgtgtgcactcctctgagctaaatttggttgatgaaaaaggaaagaagccaatttctt |
53350984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 38343190 - 38343250
Alignment:
| Q |
137 |
cctcagaatccaccacctatggagactcaatatcagatgtcaggatcaatttctccatata |
197 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
38343190 |
cctcagaatccacaacctatggagactcaatatcagttgtcacaatcaatttctccatata |
38343250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 38447383 - 38447443
Alignment:
| Q |
137 |
cctcagaatccaccacctatggagactcaatatcagatgtcaggatcaatttctccatata |
197 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
38447383 |
cctcagaatccacaacctatggagactcaatatcagttgtcacaatcaatttctccatata |
38447443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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