View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_20 (Length: 396)
Name: NF1499_low_20
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_20 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 82 - 386
Target Start/End: Complemental strand, 29150765 - 29150461
Alignment:
| Q |
82 |
cttaaagcccaacgatctatagttcttgcaaaaaataaagaaaatggggacacaatctagaacatgagctatattnnnnnnntagtaagtgatagagatc |
181 |
Q |
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| T |
29150765 |
cttaaagcccaacgatctatagttcttgcaaaaaataaagaaaatggggacacaatctagaacatgagctatattcaaaaaatagtaagtgatagagatc |
29150666 |
T |
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| Q |
182 |
atgtgatgcttagatattcttaaatgtggccacattgttaaatattaaaattacttgttagaaagcaaaatttagacatacaaacgaaagccgatgtggg |
281 |
Q |
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| T |
29150665 |
atgtgatgcttagatattcttaaatgtggccacattgttaaatattaaaattacttgttagaaagcaaaatttagacatacaaacgaaagccgatgtggg |
29150566 |
T |
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| Q |
282 |
attcttcatgcttaataaaatattgaatcttgtcttacaataatgttacaatgatataaatttacaatcatacacatcatgaaaaactttacttaacaat |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29150565 |
attcttcatgcttaataaaatattgaatcttgtcttacaataatgttacaatgatataaatgtacaatcatacacatcatgaaaaactttacttaacaat |
29150466 |
T |
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| Q |
382 |
ttcat |
386 |
Q |
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||||| |
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| T |
29150465 |
ttcat |
29150461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 5335111 - 5335016
Alignment:
| Q |
177 |
agatcatgtgatgcttagatattcttaaatgtggccacattgttaaatattaaaattacttgttagaaagcaaaatttagacatacaaacgaaagcc |
273 |
Q |
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| T |
5335111 |
agatcatgtgatgcttacaaattcttaaacgtgacaatattgctaaa-attaaaattacttgttgaaatggaaaattttgacctacaaaggaaagcc |
5335016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 23893136 - 23893046
Alignment:
| Q |
276 |
tgtgggattcttcatgcttaataaaatattgaatcttgtcttacaataatgttacaatgatataaatttacaatcatacacatcatgaaaa |
366 |
Q |
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|||||| ||||||||||| |||| |||| |||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||| |
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| T |
23893136 |
tgtgggtttcttcatgctcaatacaatacagaatcttgtcttacaataatactacattgatataaatttacaatcatatacatcatgaaaa |
23893046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 365
Target Start/End: Original strand, 15929373 - 15929461
Alignment:
| Q |
277 |
gtgggattcttcatgcttaataaaatattgaatcttgtcttacaataatgttacaatgatataaatttacaatcatacacatcatgaaa |
365 |
Q |
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| T |
15929373 |
gtgggtttctttgtgctcaataaaataattattattgtcttacaataatattacaatgatattaatttacaatcatatagatcatgaaa |
15929461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 6204 - 6128
Alignment:
| Q |
277 |
gtgggattcttcatgcttaataaaatattgaatcttgtcttacaataatgttacaatgatataaatttacaatcata |
353 |
Q |
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||||| ||||| |||| ||||||||| | | | ||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
6204 |
gtgggtttctttgtgctcaataaaataattattattgtcttacaataatattacaatgatattaatttacaatcata |
6128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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