View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_24 (Length: 364)
Name: NF1499_low_24
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_24 |
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| [»] scaffold0416 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 7664601 - 7664936
Alignment:
| Q |
13 |
tgaatagggatggtgctcggatccggacggttttggtggannnnnnnacaagcatttttggaatattgtgggtgaggatgttctccattcggtccaagac |
112 |
Q |
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| T |
7664601 |
tgaatagggatggtgcttggatccggacggttttggtggatttttttacaagcatttttggaatattgtgggtgaggatgttctccattcggtccaagac |
7664700 |
T |
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| Q |
113 |
ttcttcagaacggggtgttgctgcctaatttaaattcaaatattcttattcttattctgaatctaccaggtgttgattctttgggtgattttcggccgat |
212 |
Q |
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| T |
7664701 |
ttcttcagaacggggtgctgctgcctaatttaaattcaaatattcttattcttattctgaatctaccaggtgttgattctttgggtgattttaggccgat |
7664800 |
T |
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| Q |
213 |
tactttggctaattttcagtttaaaattgttactaaaattttagctgacatgttagctcatattaccatgcagattgtttcggttaatcaacgaggtttt |
312 |
Q |
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| T |
7664801 |
tactttggcaaattttcagtttaaaattgttactaaaattttagctgacatgttagctcatattgccatgcagaatgtttcggttaatcaacgaggtttt |
7664900 |
T |
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| Q |
313 |
attcgagatcgacgaatttcttagtgtgtgattatt |
348 |
Q |
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| T |
7664901 |
cttcgagatcgacaaattttttagtgtgtgattatt |
7664936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 18496953 - 18496885
Alignment:
| Q |
194 |
tgggtgattttcggccgattactttggctaattttcagtttaaaattgttactaaaattttagctgaca |
262 |
Q |
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| T |
18496953 |
tgggtgattttcggcctattgctttggctaactgccaatttaaaattattattaaaattttggctgaca |
18496885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 20382689 - 20382726
Alignment:
| Q |
225 |
ttttcagtttaaaattgttactaaaattttagctgaca |
262 |
Q |
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| T |
20382689 |
ttttcagtttaaaattgttactaaaactttagcagaca |
20382726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 12127 - 12194
Alignment:
| Q |
194 |
tgggtgattttcggccgattactttggctaattttcagtttaaaattgttactaaaattttagctgac |
261 |
Q |
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| T |
12127 |
tgggagattttcgacctattgctttagctaattttcaatttaaaattgtgactaagattttggctgac |
12194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 26786894 - 26786839
Alignment:
| Q |
197 |
gtgattttcggccgattactttggctaattttcagtttaaaattgttactaaaatt |
252 |
Q |
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| T |
26786894 |
gtgattttaggccgatagctttggataattttcagtttaaatttgtcactaaaatt |
26786839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 41248246 - 41248207
Alignment:
| Q |
223 |
aattttcagtttaaaattgttactaaaattttagctgaca |
262 |
Q |
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| T |
41248246 |
aattttcaatttaaaattgttacgaaaattttagctgaca |
41248207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 31349258 - 31349190
Alignment:
| Q |
194 |
tgggtgattttcggccgattactttggctaattttcagtttaaaattgttactaaaattttagctgaca |
262 |
Q |
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| T |
31349258 |
tgggtgatttccgacctatagctttgacaaattttcagtttaaaattatcacaaaaattttagctgaca |
31349190 |
T |
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