View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_29 (Length: 338)
Name: NF1499_low_29
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 41880604 - 41880834
Alignment:
| Q |
12 |
atgaaaactgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaaccgaaaagagagaaatgacaccagagttgcaaga |
111 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41880604 |
atgaaaattgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaaccgaaaagagagaaatgacaccagagttgcaaga |
41880703 |
T |
|
| Q |
112 |
actcctagactagagttacaagaactcgggcaactttatattgttcaattagaagcgaaactctctctgatttaagagcaatacttctctggtcatgctt |
211 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41880704 |
actcctagaccagagttacaagaactcgggcaactttatattgttcaattataagcggaactctctctgatttaagagcaatacttctctggtcatgctt |
41880803 |
T |
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| Q |
212 |
atctctctgcggatgtcttgaattatttact |
242 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
41880804 |
atctctctgcggatgtcttgaattatttact |
41880834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 44459466 - 44459367
Alignment:
| Q |
12 |
atgaaaactgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaaccgaaaagagagaaatgacaccagagttgcaaga |
111 |
Q |
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| T |
44459466 |
atgaaaactgtggtattgacggataatttatgagcttgaagctctaacaatggaagca----------gaacatagagaaatgacaccagagttgcaaga |
44459377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 41883076 - 41883117
Alignment:
| Q |
256 |
ataatcatctttggatttcagtcttatttattaaccttttat |
297 |
Q |
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| T |
41883076 |
ataatcatctttggatttcagtcttatttatcaaccttttat |
41883117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 50316429 - 50316199
Alignment:
| Q |
12 |
atgaaaactgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaaccgaaaagagagaaatgacaccagagttgcaaga |
111 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50316429 |
atgaaaattgtggtattgattgataatttatgagcttgaagctctcacattggaagaaaatggaaaccgaaaagagagaaatgacaccagagttgcaaga |
50316330 |
T |
|
| Q |
112 |
actcctagactagagttacaagaactcgggcaactttatattgttcaattagaagcgaaactctctctgatttaagagcaatacttctctggtcatgctt |
211 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50316329 |
actcctagaccagagttacaagaactcgagcaactttatattgttcagttagaagcgaaactctctctgatttaagagcaatacttctctggtcatgctt |
50316230 |
T |
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| Q |
212 |
atctctctgcggatgtcttgaattatttact |
242 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
50316229 |
atctctctgcggatgtcttgaattatttact |
50316199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 32957099 - 32957213
Alignment:
| Q |
12 |
atgaaaactgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaaccgaaaagagagaaatgacaccagagttgcaaga |
111 |
Q |
| |
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|||||||||||| ||||| ||||||||||||| ||| |||| | ||| ||||||||| ||| ||| ||||| ||||||||||||||||| |||||||| |
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| T |
32957099 |
atgaaaactgtgttattggctgataatttatgaactttaagctcgaacaatggaagaaagtggcaacagaaaacagagaaatgacaccagaattgcaaga |
32957198 |
T |
|
| Q |
112 |
actcctagactagag |
126 |
Q |
| |
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|||||||||| |||| |
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| T |
32957199 |
actcctagaccagag |
32957213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 11670667 - 11670437
Alignment:
| Q |
12 |
atgaaaactgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaaccgaaaagagagaaatgacaccagagttgcaaga |
111 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11670667 |
atgaaaactggggtattgattgataatttatgagcttaaagctctcacagtggaagaaaattgaaaccgaaaagagagaaatgacaccagagttgcaaga |
11670568 |
T |
|
| Q |
112 |
actcctagactagagttacaagaactcgggcaactttatattgttcaattagaagcgaaactctctctgatttaagagcaatacttctctggtcatgctt |
211 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11670567 |
actcctagaccagagttgcaagaactcgggcaactttatattgttcagttagaagcgaaactctctctgatttaagagcaatacttctctggtcatgctt |
11670468 |
T |
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| Q |
212 |
atctctctgcggatgtcttgaattatttact |
242 |
Q |
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||||||||| ||||||||||||||||||||| |
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| T |
11670467 |
atctctctgtggatgtcttgaattatttact |
11670437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 28049808 - 28049711
Alignment:
| Q |
14 |
gaaaactgtggtattgattgataatttatgagcttgaagcactcacagtggaagaaaatggaaaccgaaaagagagaaatgacaccagagttgcaagaac |
113 |
Q |
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||||||| ||||||||| |||||||||||||||||||||| || ||| |||||| | ||||| | |||||||||||||||||||||||||| |
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| T |
28049808 |
gaaaactctggtattgactgataatttatgagcttgaagctctaacaatggaagca----------gaaaataaagaaatgacaccagagttgcaagaac |
28049719 |
T |
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