View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_30 (Length: 336)
Name: NF1499_low_30
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 43513707 - 43514028
Alignment:
| Q |
4 |
caactcttcaaaagatagatcaatcaaacgaataaatcaacagaagtaaaacgaaagagaaatcaaataagggaatgaaaaagaataaacgcatcacata |
103 |
Q |
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| T |
43513707 |
caactctgcaaaagatagagcaatcatacgaataaatcaacagaagtaatacgaaagagaaatcaaataagggaatgaaaaagaataaacgcatcacata |
43513806 |
T |
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| Q |
104 |
tagttaagaaattaatttgatgaaattaaaatagtttataaattatttattactcacttgagtatcatatgattatattagatacatcagttattcaata |
203 |
Q |
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| T |
43513807 |
tagttaagaaattaatttgatgaaattaaaatagtttataaattatttattactcacttgagtatcatatgattatattagatacatcagttattcaata |
43513906 |
T |
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| Q |
204 |
aat-----tnnnnnnnncacaaaaattgttgttatagagcacacatacagttataaacatgaatcaatgcgatacagagacacttgtgattatattcaat |
298 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| |
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| T |
43513907 |
aatataaaaaaaaaacacacaaaaattgttgttatagagcacacatacagttataaacatgaatcaatgtgatacggagaaacttgtgattatattcaat |
43514006 |
T |
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| Q |
299 |
aatgtcctctacattcgacatg |
320 |
Q |
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|||||||||||||||||||||| |
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| T |
43514007 |
aatgtcctctacattcgacatg |
43514028 |
T |
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