View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_31 (Length: 332)
Name: NF1499_low_31
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 52384170 - 52383860
Alignment:
| Q |
1 |
gtgtactagttttcaagatagaatttattatgtggacacgaccatggttatcaaatcaaaattctattagtcattaggaatgacttatttttcaaattgt |
100 |
Q |
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| T |
52384170 |
gtgtactagttttcaagatagaatttattatgtggacacgaccatggttatcaaatcaaaattctattagtcatcaggaaagacttatttttcaaattgt |
52384071 |
T |
|
| Q |
101 |
gaatcgtaagatacattaccaataagttgctgagataaacaaatgacaaaagaaaagtagttggttatattgtcgtacaaatttgaacnnnnnnnngtga |
200 |
Q |
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| T |
52384070 |
gaatcgtaagatacattaccaataagttgctgagataaacaaatgacaaaagaaaagtagttggttatattgtcctacaaatttgaacaaaaaaaagtga |
52383971 |
T |
|
| Q |
201 |
tcgactgctttaagtctagatagttgttggtcagaatagatcataatgaatcagaattcaaaatgagattcatgtcgaaaatagatgatatacattataa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52383970 |
tcgactgctttaagtctagatagttgttggtcagaatagatcataatgaatcagaattcaaaatgagattcatgtcgaaaata---gatatacattataa |
52383874 |
T |
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| Q |
301 |
gttagtatcgaatt |
314 |
Q |
| |
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|||||||||||||| |
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| T |
52383873 |
gttagtatcgaatt |
52383860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 25093449 - 25093409
Alignment:
| Q |
236 |
atagatcataatgaatcagaattcaaaatgagattcatgtc |
276 |
Q |
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| T |
25093449 |
atagatcataatgaatcaacattcaagatgagattcatgtc |
25093409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 35590583 - 35590629
Alignment:
| Q |
240 |
atcataatgaatcagaattcaaaatgagattcatgtcgaaaatagat |
286 |
Q |
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| T |
35590583 |
atcataatgaatcagaattcaagatgagaatcgtgtcaaaaatagat |
35590629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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