View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_33 (Length: 319)
Name: NF1499_low_33
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 50 - 301
Target Start/End: Complemental strand, 7341376 - 7341127
Alignment:
| Q |
50 |
gggtctggaaacaaagtggcaagtgtcgcgtaaaagtcacaatcgtaagatatcggcttcaaacttggatgaaagtgttcctgttatggtaccaaatgaa |
149 |
Q |
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| T |
7341376 |
gggtctggaaacaaagtggcaagtgtcgcgtaaaactcacaatcgtaagatatcggcttcaaacttggatgaaagtgttcctgttatggtaccaaatgaa |
7341277 |
T |
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| Q |
150 |
gaaaaaccatgtcatcaaggtgaggccaataaaatggttagagaaaaagacatgttagttgatccaataattggagaaaattgataacnnnnnnnnnnnn |
249 |
Q |
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| T |
7341276 |
gaaaaaccatgtcatcaaggtgaggccaataaaatggttagagaaaaagacatgttagttgatccaataattggagaaaattgataac--aaaaaaaaat |
7341179 |
T |
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| Q |
250 |
ttccaatgattggaatatataagggaagtttgagaagagaaaggggtgtgga |
301 |
Q |
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| T |
7341178 |
ttccaatgattggaatatataagggaagtttgagaagagaaagaggtgtgga |
7341127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7341429 - 7341396
Alignment:
| Q |
1 |
caagataaactaatttgtaatttgttagctagta |
34 |
Q |
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| T |
7341429 |
caagataaactaatttgtaatttgttagctagta |
7341396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 287
Target Start/End: Original strand, 24805371 - 24805406
Alignment:
| Q |
252 |
ccaatgattggaatatataagggaagtttgagaaga |
287 |
Q |
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| T |
24805371 |
ccaatgattggaatatataacggaagtttgagaaga |
24805406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 26765677 - 26765720
Alignment:
| Q |
250 |
ttccaatgattggaatatataagggaagtttgagaagagaaagg |
293 |
Q |
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| T |
26765677 |
ttccaatgatttgaatatataaggaaagtttgaaaagagaaagg |
26765720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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