View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_35 (Length: 311)
Name: NF1499_low_35
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 3112301 - 3112006
Alignment:
| Q |
1 |
accaacactgtgagcaagtcctgcagtaaaagaatggcttgaattggccttctcaactggttcacaaaaagtggccaaagctggattgtcaatgttagag |
100 |
Q |
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| T |
3112301 |
accaacactgtgagcaagtcctgcagtaaaagaatggcttgaattggccttctcaactggttcacaaaaagtggccaaagctggattgtcaatgttagag |
3112202 |
T |
|
| Q |
101 |
acaaaaatttgtattgcatggtttggccacacaaacatcttattcacatgtagcaatggttgcatccaagcctttcctgtaccctttttagcatatagca |
200 |
Q |
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| T |
3112201 |
acaaaaatttgtattgcatggtttggccacacaaacatcttattcacatgtagcaatggttgcatccaagcctttcctgtaccctttttagcatatagca |
3112102 |
T |
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| Q |
201 |
cacaacctttgttccaactttcagaagttggaggagtcaacttcgatacaatcctatgataccggtgttgataacttaaccattccttccgcatag |
296 |
Q |
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| T |
3112101 |
cacaacctttgttccaactttcagaagttggaggagtcaacttcgatacaatcctatgataccggtgttgataacttaaccattccttccgcatag |
3112006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 35893721 - 35893984
Alignment:
| Q |
1 |
accaacactgtgagcaagtcctgcagtaaaagaatggcttgaattggccttctcaactggttcacaaaaagtggccaaagctggattgtcaatgttagag |
100 |
Q |
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| T |
35893721 |
accaacactatgagccagtccatcagtaaaggagtgacttgaattagcctcctcaactgtttggcacaaagtggccaatcctaggttgtcaacagaagac |
35893820 |
T |
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| Q |
101 |
acaaaaatttgtattgcatggtttggccacacaaacatcttattcacatgtagcaa---tggttgcatccaagcctttcctgtaccctttttagcatata |
197 |
Q |
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| T |
35893821 |
aaagaaactagttttgcatggtttggccacacaaacttcttattggcatgatggatgagtggttggatccaagccttgccactatcctttttagcataaa |
35893920 |
T |
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| Q |
198 |
gcacacaacctttgttccaactttcagaagttggaggagtcaacttcgatacaatcctatgata |
261 |
Q |
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||||||||| | |||||| ||||||| ||||||||| ||||||| || | ||||||||||| |
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| T |
35893921 |
ttacacaacctctattccaagtttcagatgttggaggaatcaacttggacatgatcctatgata |
35893984 |
T |
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