View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1499_low_37 (Length: 309)

Name: NF1499_low_37
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1499_low_37
NF1499_low_37
[»] chr7 (1 HSPs)
chr7 (11-293)||(36192784-36193066)
[»] chr6 (1 HSPs)
chr6 (11-293)||(5054429-5054708)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 36193066 - 36192784
Alignment:
Q  11 ttattctgtagagcgttcttcactttcttgttaggaacccaatttgatatttcacagataattgattggcgtgatactatgagtgatgaacttttgggca 110  Q
    ||||||||||||||||| |||| ||||  || |||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||| |||||||||    
T  36193066 ttattctgtagagcgtttttcagtttccagtgaggaacccaatttgatgtttcacagataattcattggcatgatattatgagtgatgaatttttgggca 36192967  T
Q  111 gactgtgacagtgttaacaatatctgttatttgttataccagatgtagagtccatcttcactattatctgcaatcttgttacgaagactgagaattcaga 210  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36192966 gactgtgactgtgtttacaatgtctgttatttgttataccagatgtagagtccatcttcactattatctgcaatcttgttacgaagactgagaatccaga 36192867  T
Q  211 tgaagtcatggagattgtgaaagttataactgcaaaattagttcagcagccaaatgaaaagcctgcggtgcgattgaagatgt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36192866 tgaagtcatggagattgtgaaagttataactgcaaaattagttcagcagccaaatgaaaagcctgcggtgcgattgaaaatgt 36192784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 5054429 - 5054708
Alignment:
Q  11 ttattctgtagagcgttcttcactttcttgttaggaacccaatttgatatttcacagataattgattggcgtgatactatgagtgatgaacttttgggca 110  Q
    ||||||||||| ||||| ||||||| || |||||||| |||||||||| || |||||||||||||||||| || || || |||||||||| |||||||||    
T  5054429 ttattctgtagcgcgtttttcactt-ctagttaggaatccaatttgatgttccacagataattgattggcatggtaatacgagtgatgaaattttgggca 5054527  T
Q  111 gactgtgacagtgttaacaatatctgttatttgttataccagatgtagagtccatcttcactattatctgcaatcttgttacgaagactgagaattcaga 210  Q
    || ||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  5054528 gaatgtgac--tgtttacaatatctgttatttgttataccagatgtagagtccatcttcactattgtctgcaatcttgttacgaagactgagaatccaga 5054625  T
Q  211 tgaagtcatggagattgtgaaagttataactgcaaaattagttcagcagccaaatgaaaagcctgcggtgcgattgaagatgt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054626 tgaagtcatggagattgtgaaagttataactgcaaaattagttcagcagccaaatgaaaagcctgcggtgcgattgaagatgt 5054708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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