View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1499_low_38 (Length: 298)
Name: NF1499_low_38
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 3112029 - 3111745
Alignment:
| Q |
1 |
aacttaaccattccttccgcatagggtaatttggacagccaagaacaccaagcactacttctccatcctctacgagcgctagagctacagcatattgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3112029 |
aacttaaccattccttccgcatagggtaatttggacagccaagaacaccaagcactacttctccatcctctacgagcgctagagctacagcatattgatc |
3111930 |
T |
|
| Q |
101 |
gccacgaacaaacccgagtgtgccatcaacaggatctagtacccaaaatcttccagatggaccaccggttgagttgcagcgacttataatatcgagaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3111929 |
gccacgaacaaacccgagtgtgccatcaacaggatctagtacccaaaatcttccagatggaccaccggttgagttgcagcgacttataatatcgagaact |
3111830 |
T |
|
| Q |
201 |
tctgaatttccaagtggtgattttggcttctgaacaccaaatcgaggcgcttcagctaggcaatcattcacagttttaaccacag |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3111829 |
tctgaatttccaagtggtgattttggcttctgaacaccaaatcgaggcgcttcagctaggcaatcattcacagttttaaccacag |
3111745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 35894015 - 35894221
Alignment:
| Q |
20 |
catagggtaatttggacagccaagaacaccaagcactacttctccatcctctacgagcgctagagctacagcatattgatcgccacgaacaaacccgagt |
119 |
Q |
| |
|
||||||||| || ||||| ||||||||||||| ||| |||||||||||||||||||| | || |||||||||||||||||| ||| ||||| || | | |
|
|
| T |
35894015 |
catagggtagttaggacacccaagaacaccaaccaccacttctccatcctctacgagtgataaagctacagcatattgatcaccatttacaaatcccaat |
35894114 |
T |
|
| Q |
120 |
gtgccatcaacaggatctagtacccaaaatcttccagatggaccaccggttgagttgcagcgacttataatatcgagaacttctgaatttccaagtggtg |
219 |
Q |
| |
|
| ||||||| |||| |||| ||||||||||||| || |||| || |||||||||| |||| || || || ||||| |||||| ||||||| | || |
|
|
| T |
35894115 |
ttaccatcaagaggacttagtgcccaaaatcttcccgaatgacccccaactgagttgcagtgactaatgatttcaagaacctctgaagttccaagagctg |
35894214 |
T |
|
| Q |
220 |
attttgg |
226 |
Q |
| |
|
||||||| |
|
|
| T |
35894215 |
attttgg |
35894221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 19058473 - 19058529
Alignment:
| Q |
227 |
cttctgaacaccaaatcgaggcgcttcagctaggcaatcattcacagttttaaccac |
283 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
19058473 |
cttctgaacaccaaatcaaggcgcttcagttaggcaatcattcacaattttaaccac |
19058529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 50803436 - 50803381
Alignment:
| Q |
227 |
cttctgaacaccaaatcgaggcgcttcagctaggcaatcattcacagttttaacca |
282 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
50803436 |
cttccgaacaccaaatcgaggcgcttcagttaggcaatcattcacaattttaacca |
50803381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 50872441 - 50872496
Alignment:
| Q |
227 |
cttctgaacaccaaatcgaggcgcttcagctaggcaatcattcacagttttaacca |
282 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
50872441 |
cttccgaacaccaaatcgaggcgcttcagttaggcaatcattcacaattttaacca |
50872496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University