View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_4 (Length: 595)
Name: NF1499_low_4
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 78 - 299
Target Start/End: Original strand, 35180797 - 35181018
Alignment:
| Q |
78 |
caaatgtgatgagggagcacttttgtaataatatatgttcaagagattacattttcttttctcttgcaaatgatttgatagcttccttacacgtgaacct |
177 |
Q |
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| T |
35180797 |
caaatgtgatgagggagcacttttgtaataatatatgttcaagagattacattttcttttctcttgcaaatgatttgatagcttccttacacgtgaacct |
35180896 |
T |
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| Q |
178 |
gagtaaaactactgctcttcataattaatccaaagtagtactacttctttcaccaaaacaaaatttgnnnnnnnnnccttaacttcttttgtgatgcggt |
277 |
Q |
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| T |
35180897 |
gagtaaaactactgctcttcataattaatccaaagtagtactacttctttcaccaaaacaaaatttgtttttttttccttaacttcttttgtgatgcggt |
35180996 |
T |
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| Q |
278 |
tcaagatattcaaagatttgca |
299 |
Q |
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| T |
35180997 |
tcaagatattcaaagatttgca |
35181018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 324 - 481
Target Start/End: Original strand, 35181018 - 35181175
Alignment:
| Q |
324 |
atctctagtatgcattccaaggtgagacatatatctcatgagaggaagggaactagaatcccgagtcatctttaaattcaatatccaagtacaacccaac |
423 |
Q |
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| T |
35181018 |
atctctagtatgcattccaaggtgagacatatatctcatgagaggaagggaactagaatcccaagtcatctttaaattcaatatccaagtacaatccaac |
35181117 |
T |
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| Q |
424 |
atagtatactcaatgacatactaccaagttgaagaggcatatgcaatagaatatctag |
481 |
Q |
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| T |
35181118 |
atagtatactcaatgacatactaccaagttgaagaggcatatgcaatagaatatctag |
35181175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 275 - 413
Target Start/End: Original strand, 35183779 - 35183917
Alignment:
| Q |
275 |
ggttcaagatattcaaagatttgcaaatccgaggtatgactaattagtaatctctagtatgcattccaaggtgagacatatatctcatgagaggaaggga |
374 |
Q |
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| T |
35183779 |
ggttcaagatattcaaagatttgcaaacccaaggtatgactaatttgtaatctctagtatgcactccaaggtgagacatatatctcattagaggaatgga |
35183878 |
T |
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| Q |
375 |
actagaatcccgagtcatctttaaattcaatatccaagt |
413 |
Q |
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| T |
35183879 |
attagaatcccaagtcatctctatattcaatatccaagt |
35183917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 35181173 - 35181250
Alignment:
| Q |
503 |
tagagctaaaatgaatcactaggtaaatattaattttgaagctacatccatgatacagtcctaaacatttttcatatt |
580 |
Q |
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| T |
35181173 |
tagagctaaaattaatcactaggtaaatattaattttgaagctacatccatgatacagtcctaaacatttttcatatt |
35181250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 479 - 580
Target Start/End: Original strand, 35183933 - 35184038
Alignment:
| Q |
479 |
taggcaaaattatacaatttcagttagagctaaaatgaatcac----taggtaaatattaattttgaagctacatccatgatacagtcctaaacattttt |
574 |
Q |
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|||||||||||||| |||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35183933 |
taggcaaaattataacatttcagttagaactaaaattaatcacttgttaattaaatattaattttgaagctacatccatgatacagtcctaaacattttt |
35184032 |
T |
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| Q |
575 |
catatt |
580 |
Q |
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|||||| |
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| T |
35184033 |
catatt |
35184038 |
T |
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