View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_44 (Length: 282)
Name: NF1499_low_44
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 29192024 - 29191762
Alignment:
| Q |
1 |
cgatccaatacacacaaaaaatatacaaacactccgaaaacactgaatcaagcttcgtcacttccgataatcaaaattcagttgcatggattacgtaata |
100 |
Q |
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| T |
29192024 |
cgatccaatacacacaaaaaatatacaaacactccgaaaacactgaatcaagcttcgtcacttccgataatcaaaattcagttgcatggattacgtaata |
29191925 |
T |
|
| Q |
101 |
gcgaaaacagaaacgaaatcgaaaaaggaaaagtgatcggagttacaaggagtttggcgttgaatgcaacggtgaggacgacatcggagaagttgagatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29191924 |
gcgaaaacagaaacgaaatcgaaaaaggaaaagttatcggagttacaaggagtttggcgttgaatgcaacggtgaggacgacatcggagaagttgagatc |
29191825 |
T |
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| Q |
201 |
ggaggagaaacggaggaaagcgggggtggaggaggagatccatgtgccacgtggaggacggtt |
263 |
Q |
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| T |
29191824 |
ggaggagaaacggaggaaagcggaggtggaggaggagatccatgtgccacgtggaggacggtt |
29191762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 34 - 263
Target Start/End: Original strand, 33633842 - 33634072
Alignment:
| Q |
34 |
ccgaaaacactgaatcaagcttcgtcacttccgataatcaaaattcagttgcatggattacgtaatagcg-aaaacagaaacgaaatcgaaaaaggaaaa |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||| |
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| T |
33633842 |
ccgaaaacactgaatcaagcttcgtcacttccgataatgaaaattcagttgcatcgattaagtaatagcataaaacagaaatgaaatcgaaaaaggaaaa |
33633941 |
T |
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| Q |
133 |
gtgatcggagttacaaggagtttggcgttgaatgcaacggtgaggacgacatcggagaagttgagatcggaggagaaacggaggaaagcgggggtggagg |
232 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
33633942 |
gtgatcggagttacgaggagtttagcgttgaaggcaacggtgagaacgacgtcggagaagttgagatcggaggagaatcggaggaaagcggaggtggagg |
33634041 |
T |
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| Q |
233 |
aggagatccatgtgccacgtggaggacggtt |
263 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33634042 |
aggagatccatgtgccacgtggaggacggtt |
33634072 |
T |
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