View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_45 (Length: 279)
Name: NF1499_low_45
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 40334379 - 40334129
Alignment:
| Q |
18 |
aaaacgtaaattgatccaaagtcgaaaacctaacaaaatatattatcaaatatttttggatctcgctttatgaaaaccgatcgatttatatcatatttca |
117 |
Q |
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| T |
40334379 |
aaaacgtaaattgatccaaagtcgaaaacctaacaaaatatattatcaaatatttttggatctcgctttatgaaaaccgatcgagttatatcatatttta |
40334280 |
T |
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| Q |
118 |
tattagtttgttcaaagttaaattaaaacgattttatttaacacnnnnnnnaagggagattttatgtaatacttatttttgttattagagtaagaagaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40334279 |
tattagtttgttcaaagttaaattaaaacgattttatttaacactttttttaagggagattttatgtaatacttatttttgttattagagtaagaagaat |
40334180 |
T |
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| Q |
218 |
tgcactaatannnnnnnnacaatacttcttagttttttgcttcaaagtata |
268 |
Q |
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| T |
40334179 |
tgcactaatattttttttacaatacttcttagttttttgcttcaaagtata |
40334129 |
T |
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